Thanks Michael, After trying again with the gempak6.8.0-2 tarball, those errors went away. I had to install libXi-devel and python-devel to deal with a couple of more warnings (updated list below for future reference). python-devel installed for this error: could not find python2.6/Python.h libXi-devel installed for this error: error: X11/extensions/XInput.h: No such file or directory The only remaining make.out errors (Missing type converters) are below which was somewhat mentioned but never publicly responded too in: https://www.unidata.ucar.edu/mailing_lists/archives/gembud/2009/msg00052.htm l http://www.unidata.ucar.edu/mailing_lists/archives/gembud/2010/msg00052.html if anyone has seen or knows whether they can be ignored, much appreciated. make.out snippit Making install in python make[5]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/xml2/v2.6.31/python' Making install in . make[6]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/xml2/v2.6.31/python' /usr/bin/python ./generator.py . ./generator.py:27: DeprecationWarning: The xmllib module is obsolete. Use xml.sax instead. import xmllib Found 1595 functions in libxml2-api.xml Found 55 functions in libxml2-python-api.xml Generated 880 wrapper functions, 555 failed, 215 skipped Missing type converters: xmlRelaxNGValidityErrorFunc *:2 xmlXPathObjectPtr:22 const htmlEntityDesc *:2 xmlOutputMatchCallback:1 xmlElementContentPtr *:1 xmlStructuredErrorFunc:5 xmlSchematronValidCtxtPtr:2 xmlParserInputBufferCreateFilenameFunc:2 xmlSchemaValType:2 size_t:1 xmlEnumerationPtr:5 xmlSchemaWildcardPtr:1 xmlXIncludeCtxtPtr:4 xmlRelaxNGValidityErrorFunc:2 xmlSAXHandler *:4 ...:1 xmlShellReadlineFunc:1 xmlDict *:1 xmlAutomataPtr:19 xmlParserInputPtr:17 xmlCatalogAllow:2 xmlExpNodePtr:3 xmlElementContent *:1 xmlCharEncodingOutputFunc:1 xmlDictPtr:10 xmlTextWriterPtr:77 const htmlElemDesc *:1 xmlChRangeGroup *:1 xmlIDPtr:1 xmlSchemaValPtr:13 xmlInputMatchCallback:1 xmlElementTablePtr:2 xmlChar **:16 xmlXPathCompExprPtr:6 xmlTextReaderErrorFunc:1 xmlExternalEntityLoader:2 xmlNotationTablePtr:2 xmlXPathVariableLookupFunc:1 xmlParserNodeInfoPtr:1 xmlExpCtxtPtr:14 xmlPatternPtr:8 xmlC14NIsVisibleCallback:1 xmlDeregisterNodeFunc:2 va_list:1 xmlSchemaTypePtr:9 htmlStatus:1 xmlRegisterNodeFunc:2 xmlAttributeType:2 xmlRefPtr:1 xmlCharEncodingHandler *:4 xmlNotationPtr:3 xmlSaveCtxtPtr:8 xmlRegExecCallbacks:1 xmlNsPtr *:1 xmlLocationSetPtr:6 xmlSchemaSAXPlugPtr:1 xmlModulePtr:4 xmlEnumerationPtr *:2 xmlShellCtxtPtr:10 xlinkNodeDetectFunc:2 xmlRefTablePtr:1 xmlStreamCtxtPtr:6 xmlSchemaValidityErrorFunc *:2 xmlAttributeTablePtr:2 xmlSchematronParserCtxtPtr:5 xmlCatalogPrefer:1 xmlParserNodeInfoSeqPtr:3 xmlSchematronPtr:2 xmlNodePtr *:2 xmlInputReadCallback:7 char **:5 xmlCharEncoding:13 xmlRegExecCtxtPtr:5 xmlElementContentType:2 void *:86 xmlTextReaderErrorFunc *:1 xmlSAXHandlerPtr *:1 xmlEntityReferenceFunc:1 xmlDocPtr *:1 xmlBufferAllocationScheme:3 xmlSchemaValidityErrorFunc:2 xmlDOMWrapCtxtPtr:6 xmlOutputWriteCallback:2 xmlSchemaFacetPtr:7 xlinkHandlerPtr:2 xmlXPathFuncLookupFunc:1 htmlElemDesc *:3 xmlCharEncodingHandlerPtr:7 xmlCharEncodingInputFunc:1 xmlFeature:1 const xmlParserNodeInfo *:1 xmlNodeSetPtr:32 xmlEntitiesTablePtr:3 xmlIDTablePtr:1 xmlXPathFunction:4 xmlOutputBufferCreateFilenameFunc:2 xmlElementContentPtr:8 xmlElementTypeVal:1 xlinkType:1 xmlGenericErrorFunc *:1 touch gen_prog /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.6 -I../include -I../include -I../python -g -O2 -pedantic -W -Wformat -Wunused -Wimplicit -Wreturn-type -Wswitch -Wcomment -Wtrigraphs -Wformat -Wchar-subscripts -Wuninitialized -Wparentheses -Wshadow -Wpointer-arith -Wcast-align -Wwrite-strings -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wnested-externs -Winline -Wredundant-decls -MT libxml.lo -MD -MP -MF .deps/libxml.Tpo -c -o libxml.lo libxml.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.6 -I../include -I../include -I../python -g -O2 -pedantic -W -Wformat -Wunused -Wimplicit -Wreturn-type -Wswitch -Wcomment -Wtrigraphs -Wformat -Wchar-subscripts -Wuninitialized -Wparentheses -Wshadow -Wpointer-arith -Wcast-align -Wwrite-strings -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wnested-externs -Winline -Wredundant-decls -MT libxml.lo -MD -MP -MF .deps/libxml.Tpo -c libxml.c -o libxml.o In file included from /usr/include/python2.6/Python.h:86, from libxml.c:14: /usr/include/python2.6/intobject.h:45: warning: ISO C90 does not support 'long long' In file included from /usr/include/python2.6/Python.h:88, from libxml.c:14: ------ Making install in python make[5]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/xslt/v1.1.20/python' Making install in . make[6]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/xslt/v1.1.20/python' cd . && /usr/bin/python generator.py generator.py:18: DeprecationWarning: The xmllib module is obsolete. Use xml.sax instead. import xmllib Found 235 functions in libxslt-api.xml Found 32 functions in libxslt-python-api.xml Generated 139 wrapper functions, 96 failed, 32 skipped Missing type converters: xsltTopLevelFunction:2 xmlXPathObjectPtr:1 xsltDecimalFormatPtr:2 xmlChar **:2 xmlXPathCompExprPtr:4 xsltPreComputeFunction:1 xsltElemPreCompPtr:2 xsltDebugTraceCodes:2 xsltDocumentPtr:8 xsltSecurityPrefsPtr:11 xsltTemplatePtr:4 pythonObject *:5 ...:1 xsltNumberDataPtr:1 xmlHashTablePtr:1 xmlNodePtr *:3 xsltExtInitFunction:2 xsltCompilerCtxtPtr:2 char **:2 xmlXPathObjectPtr *:1 xmlNodeSetPtr:2 xmlXPathFunction:4 xsltTransformFunction:5 xsltCompMatchPtr:3 void *:13 xmlOutputBufferPtr:1 xsltPointerListPtr:4 xmlDictPtr:1 xsltSortFunc:2 xsltNsMapPtr:1 xsltStackElemPtr:3 touch gen_prog Thanks, Evan From: Michael James [mailto:mjamesis@xxxxxxxxx] Sent: Friday, June 28, 2013 12:09 PM To: Evan Lowery Cc: gembud@xxxxxxxxxxxxxxxx Subject: Re: [gembud] Errors in GEMPAK6.8.0 make.out on CentOS6.4 Evan, I am curious if this is due to github not preserving timestamps so during ./configure the autoconf tools are run when they should not be. Can you try the same configuration and build with the source tarball on the Unidata download site and see if the warning and error messages disappear? Michael On Fri, Jun 28, 2013 at 9:29 AM, Evan Lowery <elowery@xxxxxxxxxxxx> wrote: Hi everyone, Has anyone ever had these errors in their make.out and can they be ignored? I'm installing GEMPAK6.8.0 from github on a clean CentOS6.4 VM and can't figure out a couple of errors with google. Below are the libraries/versions installed using yum, steps taken, and errors that are showing up in the make.out (attached). #Download and install CentOS-6.4-x86_64-minimal.iso on VirtualBox #2CPU, 2GB Ram, 20GB Disk #relevant libraries added make-3.81-20.el6.x86_64 autoconf-2.63-5.1.el6.noarch automake-1.11.1-4.el6.noarch #recommended added gcc-4.4.7-3.el6.x86_64 gcc-c++-4.4.7-3.el6.x86_64 gcc-gfortran-4.4.7-3.el6.x86_64 libX11-1.5.0-4.el6.x86_64 libX11-devel-1.5.0-4.el6.x86_64 libXt-devel-1.1.3-1.el6.x86_64 libXext-devel-1.3.1-2.el6.x86_64 libXp-1.0.0-15.1.el6.x86_64 libXp-devel-1.0.0-15.1.el6.x86_64 libXft-devel-2.3.1-2.el6.x86_64 libXtst-devel-1.2.1-2.el6.x86_64 xorg-x11-xbitmaps-1.0.1-9.1.el6.x86_64 flex-2.5.35-8.el6.x86_64 byacc-1.9.20070509-7.el6.x86_64 *fonts-ISO8859-* #needed for openmotif rpm install libXmu-1.1.1-2.el6.x86_64 libjpeg-turbo-1.2.1-1.el6.x86_64 libpng-1.2.49-1.el6_2.x86_64 #needed b/c of errors in make.out libxml2-python-2.7.6-12.el6_4.1.x86_64 doxygen-1.6.1-6.el6.x86_64 #openmotif rpms http://sourceforge.net/projects/motif/files/Motif%202.3.4%20Binaries/Red%20H at%20Enterprise%20Linux%206%20x86_64/ motif-2.3.4-1.x86_64.rpm motif-devel-2.3.4-1.x86_64.rpm motif-debuginfo-2.3.4-1.x86_64.rpm motif-demos-2.3.4-1.x86_64.rpm #installing in /usr/local as root #download from github git clone git://github.com/Unidata/gempak.git GEMPAK6.8.0 ln -s GEMPAK6.8.0/ NAWIPS #update Gemenviron.profile (NAWIPS,LDMDATA,GEMDATA) cd GEMPAK6.8.0 make all >& make.out #error snippits in make.out Done configuring make[4]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/xml2/v2.6.31' cd . && /bin/sh /usr/local/GEMPAK6.8.0/extlibs/xml2/libxml2/missing --run aclocal-1.10 /usr/local/GEMPAK6.8.0/extlibs/xml2/libxml2/missing: line 46: aclocal-1.10: command not found WARNING: `aclocal-1.10' is missing on your system. You should only need it if you modified `acinclude.m4' or `configure.in'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/sh /usr/local/GEMPAK6.8.0/extlibs/xml2/libxml2/missing --run automake-1.10 --gnu /usr/local/GEMPAK6.8.0/extlibs/xml2/libxml2/missing: line 46: automake-1.10: command not found WARNING: `automake-1.10' is missing on your system. You should only need it if you modified `Makefile.am', `acinclude.m4' or `configure.in'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/sh /usr/local/GEMPAK6.8.0/extlibs/xml2/libxml2/missing --run autoconf aclocal.m4:14: error: this file was generated for autoconf 2.61. You have another version of autoconf. If you want to use that, you should regenerate the build system entirely. aclocal.m4:14: the top level autom4te: /usr/bin/m4 failed with exit status: 63 make[4]: *** [configure] Error 1 make[4]: Leaving directory `/usr/local/GEMPAK6.8.0/extlibs/xml2/v2.6.31' make[3]: *** [_xml2] Error 2 make[3]: Leaving directory `/usr/local/GEMPAK6.8.0/extlibs/xml2' make[2]: *** [/usr/local/GEMPAK6.8.0/os/linux64/lib/libxml2.a] Error 2 make[2]: Leaving directory `/usr/local/GEMPAK6.8.0/extlibs/xml2' making in /usr/local/GEMPAK6.8.0/extlibs/xslt make[2]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/xslt' make -w _xslt make[3]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/xslt' make[4]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/xslt/v1.1.20' make[4]: *** No rule to make target `distclean'. Stop. make[4]: Leaving directory `/usr/local/GEMPAK6.8.0/extlibs/xslt/v1.1.20' make[3]: [clean] Error 2 (ignored) Creating /usr/local/GEMPAK6.8.0/os/linux64 Making in /usr/local/GEMPAK6.8.0/extlibs/xslt/libxslt .. config.status: executing depfiles commands make[4]: Entering directory `/usr/local/GEMPAK6.8.0/extlibs/JasPer/v1.900.1' cd . && /bin/sh /usr/local/GEMPAK6.8.0/extlibs/JasPer/jasper/acaux/missing --run aclocal-1.9 /usr/local/GEMPAK6.8.0/extlibs/JasPer/jasper/acaux/missing: line 46: aclocal-1.9: command not found WARNING: `aclocal-1.9' is missing on your system. You should only need it if you modified `acinclude.m4' or `configure.ac'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/sh /usr/local/GEMPAK6.8.0/extlibs/JasPer/jasper/acaux/missing --run automake-1.9 --foreign /usr/local/GEMPAK6.8.0/extlibs/JasPer/jasper/acaux/missing: line 46: automake-1.9: command not found WARNING: `automake-1.9' is missing on your system. You should only need it if you modified `Makefile.am', `acinclude.m4' or `configure.ac'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/sh /usr/local/GEMPAK6.8.0/extlibs/JasPer/jasper/acaux/missing --run autoconf configure.ac:156: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:1974: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:1994: AC_CACHE_CHECK is expanded from... aclocal.m4:621: AC_LIBTOOL_COMPILER_OPTION is expanded from... aclocal.m4:4829: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... aclocal.m4:2674: _LT_AC_LANG_C_CONFIG is expanded from... aclocal.m4:2673: AC_LIBTOOL_LANG_C_CONFIG is expanded from... aclocal.m4:86: AC_LIBTOOL_SETUP is expanded from... aclocal.m4:66: _AC_PROG_LIBTOOL is expanded from... aclocal.m4:31: AC_PROG_LIBTOOL is expanded from... configure.ac:156: the top level Thanks, Evan _______________________________________________ gembud mailing list gembud@xxxxxxxxxxxxxxxx For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/mailing_lists/
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