I think you have the netcdf that either doesn't do fortran or uses
f2c. If you want to use g95 or gfortran fink has separate libs as
follows:
tcsh-% fink list netcdf
Information about 6701 packages read in 1 seconds.
i netcdf 3.6.2-6 Interface &
lib for array-based data access
netcdf-absoft 3.5.1-1014 Lib for array-
oriented data & interface to Absoft Fortran
netcdf-absoft-bin 3.5.1-1014 Lib for array-
oriented data & interface to Absoft Fortran
netcdf-absoft-shlibs 3.5.1-1014 Lib for array-
oriented data & interface to Absoft Fortran
i netcdf-bin 3.6.2-6 Interface &
lib for array-based data access
netcdf-g95 3.6.2-6 Interface &
lib for array-based data access
netcdf-g95-shlibs 3.6.2-6 Interface &
lib for array-based data access
i netcdf-gfortran 3.6.2-7 Interface &
lib for array-based data access
i netcdf-gfortran-shlibs 3.6.2-7 Interface &
lib for array-based data access
netcdf-perl-pm586 1.2.3-6 Perl extension
for netCDF datasets access
i netcdf-shlibs 3.6.2-6 Interface &
lib for array-based data access
so if you want to use g95 first run
fink install netcdf-g95 netcdf-g95-shlibs
make sure you link in the resulting libs and then things should work
better.
-Roy M.
On Jan 28, 2008, at 10:38 AM, Felipe Pimenta wrote:
Hi Steve,
The command: nm /sw/lib/libnetcdf.a | grep nf_def_var resulted in
nothing (no expressions such as nf_def_var) .
The result of "nm /sw/lib/libnetcdf.a > ~/Desktop/output.txt" it's
included as attachment to this message. Here goes a sample. There is a
_nc_def_var:
U _nc_cktype
00000b00 T _nc_def_var
U _nc_inq_natts
00000db0 T _nc_inq_var
00001060 T _nc_inq_vardimid
00000d40 T _nc_inq_varid
Thanks,
Felipe
On Jan 28, 2008 1:00 PM, Steve Cousins <cousins@xxxxxxxxxxxxxx> wrote:
On Mon, 28 Jan 2008, felipe@xxxxxxxx wrote:
Hi Steve,
No, I don't have a /sw/lib/libnetcdff.a. This is what I have at /
sw/lib :
ls /sw/lib/libnet*
/sw/lib/libnetcdf.3.dylib /sw/lib/libnetcdf.dylib
/sw/lib/libnetcdf_c++.4.dylib /sw/lib/libnetcdf_c++.la
/sw/lib/libnetcdf.4.dylib /sw/lib/libnetcdf.la
/sw/lib/libnetcdf_c++.a
/sw/lib/libnetcdf.a /sw/lib/libnetcdf_c++.3.dylib
/sw/lib/libnetcdf_c++.dylib
Hi Felipe,
Ok. How about running:
nm /sw/lib/libnetcdf.a | grep nf_def_var
to see if the symbol is in there at all. Perhaps it wasn't
compiled with
the Fortran code? Or just do:
nm /sw/lib/libnetcdf.a
to see what _is_ in there and what the underscoring is like.
Good luck,
Steve
Thanks for your suggestion,
Felipe
On Jan 28, 2008 12:39 PM, Steve Cousins <cousins@xxxxxxxxxxxxxx>
wrote:
Is there a /sw/lib/libnetcdff.a file (two f's at the end)? I've
run into
this where code that used to work now needs to add this library
in to get
the Fortran symbols. FWIW, I vote that this "feature" gets
removed. It is
a real pain.
I hope this helps.
Steve
__________________________________________________________________
____
Steve Cousins, Ocean Modeling Group Email:
cousins@xxxxxxxxxxxxxx
Marine Sciences, 452 Aubert Hall http://
rocky.umeoce.maine.edu
Univ. of Maine, Orono, ME 04469 Phone: (207) 581-4302
On Mon, 28 Jan 2008, Felipe Pimenta wrote:
Hi Roy,
I did it with "-L/sw/lib/ -lnetcdf" and also trying with and
without
the -fno-second-underscore and -fno-underscoring flags. The
result is
still an error:
g95 -O5 -o pom.exe pom2k.f areas_masks.o advave.o advq.o
advt1.o
advt2.o advct.o advu.o advv.o baropg.o bcond.o bcondorl.o
box.o dens.o
depth.o file2ic.o findpsi.o printall.o profq.o proft.o profu.o
profv.o
prxy.o prxyz.o prxz.o pryz.o seamount.o slpmax.o smol_adif.o
vertvl.o
def_var_netcdf.o handle_netcdf_error.o write_netcdf.o -L/sw/lib/
-lnetcdf
ld: Undefined symbols:
_nf_def_var__
_nf_put_att_text__
_nf_strerror__
_nccre_
...
... (long list...)
...
_nf_set_fill__
_nf_sync__
make: *** [pom.exe] Error 1
Thanks,
Felipe
On Jan 28, 2008 12:38 PM, Roy Mendelssohn
<Roy.Mendelssohn@xxxxxxxx> wrote:
Okay, I looked more closely at your command line. You have
"-L/sw/lib/libnetcdf.a -lnetcdf"
it should be
"-L/sw/lib/ -lnetcdf"
Give that a try.
-Roy M.
On Jan 28, 2008, at 8:51 AM, Felipe Pimenta wrote:
Dear Ed Hartnett and Roy Mendelssohn,
Thanks for your email. I tried to compile the code with the
following flags:
-fno-second-underscore and
-fno-underscoring
Together, separated and with g95 and g77. The problem still
occurs. I
also checked the packages I have from Fink:
g95 0.90-3 Another GNU Fortran 1995 compiler
netcdf-g95 3.6.2-6 Interface & lib for array-based
data access
I've rebuild them from source with Fink, but I could not
solve the
problem.
Thanks,
Felipe
On 1/26/08, Roy Mendelssohn <Roy.Mendelssohn@xxxxxxxx> wrote:
Use whatever is he option that suppresses adding an
underscore to
subroutine names.
-Roy M.
On Jan 26, 2008, at 6:16 AM, Felipe Pimenta wrote:
Hi,
I currently upgraded the netcdf of my mac power pc OS X
10.4.11 to
netcdf-g95 using fink (I will have to work with g95 in a near
future).
However, a code that I used to run on g77 with netcdf not
is not
compiling anymore. I've changed the library file path
inside the
fortran subroutine to:
include '/sw/lib/netcdf-g95/include/netcdf.inc'
but the following problem occurs:
g77 -O5 -o pom.exe pom2k.f areas_masks.o advave.o advq.o
advt1.o
advt2.o advct.o advu.o advv.o baropg.o bcond.o bcondorl.o
box.o
dens.o
depth.o file2ic.o findpsi.o printall.o profq.o proft.o
profu.o
profv.o
prxy.o prxyz.o prxz.o pryz.o seamount.o slpmax.o smol_adif.o
vertvl.o
def_var_netcdf.o handle_netcdf_error.o write_netcdf.o
-L/sw/lib/libnetcdf.a -lnetcdf
/usr/bin/ld: Undefined symbols:
_nf_def_var__
_nf_put_att_text__
_nf_strerror__
_nf_close__
_nf_create__
_nf_def_dim__
_nf_enddef__
_nf_put_var_real__
_nf_put_vara_real__
collect2: ld returned 1 exit status
make: *** [pom.exe] Error 1
I also tried to compile the code with g95, without
success. Does
anybody have any suggestions?
Thanks a lot,
Felipe
_______________________________________________
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netcdfgroup@xxxxxxxxxxxxxxxx
For list information or to unsubscribe, visit: http://
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**********************
"The contents of this message do not reflect any position
of the U.S.
Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
1352 Lighthouse Avenue
Pacific Grove, CA 93950-2097
e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
voice: (831)-648-9029
fax: (831)-648-8440
www: http://www.pfeg.noaa.gov/
"Old age and treachery will overcome youth and skill."
--
=================================
Felipe Mendonca Pimenta
College of Marine and Earth Studies
University of Delaware, 211 Robinson Hall
Newark, DE, 19716-3501 USA
Phone: (302) 831-2848, felipe@xxxxxxxx
=================================
**********************
"The contents of this message do not reflect any position of
the U.S.
Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
1352 Lighthouse Avenue
Pacific Grove, CA 93950-2097
e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
voice: (831)-648-9029
fax: (831)-648-8440
www: http://www.pfeg.noaa.gov/
"Old age and treachery will overcome youth and skill."
--
=================================
Felipe Mendonca Pimenta
College of Marine and Earth Studies
University of Delaware, 211 Robinson Hall
Newark, DE, 19716-3501 USA
Phone: (302) 831-2848, felipe@xxxxxxxx
=================================
_______________________________________________
netcdfgroup mailing list
netcdfgroup@xxxxxxxxxxxxxxxx
For list information or to unsubscribe, visit: http://
www.unidata.ucar.edu/mailing_lists/
--
=================================
Felipe Mendonca Pimenta
College of Marine and Earth Studies
University of Delaware, 211 Robinson Hall
Newark, DE, 19716-3501 USA
Phone: (302) 831-2848, felipe@xxxxxxxx
=================================
--
=================================
Felipe Mendonca Pimenta
College of Marine and Earth Studies
University of Delaware, 211 Robinson Hall
Newark, DE, 19716-3501 USA
Phone: (302) 831-2848, felipe@xxxxxxxx
=================================<output.txt>_________________________
______________________
netcdfgroup mailing list
netcdfgroup@xxxxxxxxxxxxxxxx
For list information or to unsubscribe, visit: http://
www.unidata.ucar.edu/mailing_lists/
**********************
"The contents of this message do not reflect any position of the U.S.
Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
1352 Lighthouse Avenue
Pacific Grove, CA 93950-2097
e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
voice: (831)-648-9029
fax: (831)-648-8440
www: http://www.pfeg.noaa.gov/
"Old age and treachery will overcome youth and skill."
