Aha! That's something I'd not explicitly tried. Thank you!
gerry
On Mon, Aug 26, 2013 at 4:01 PM, Orion Poplawski <orion@xxxxxxxxxxxxx>wrote:
> On 08/26/2013 07:21 AM, Stefan Mauerberger wrote:
>
>> Hello there,
>>
>> first of all, building serial netCDF on Ubuntu 12.10 works fine.
>> Therefore I installed the packages libhdf5-dev and libhdf5-7 1.8.8-9.
>> All tests pass through.
>>
>> Well, in INSTALL.cmake lines 72 and 90 are wrong. They should better
>> read as
>> cmake ./ -DCMAKE_INSTALL_PREFIX=$HOME/**local ...
>> instead of
>> ./cmake
>> In addition between lines 72-73 and 90-91 a 'make' is missing.
>>
>> In contrast to serial netCDF, I can not build netCDF with parallel I/O
>> support. Both CMake and ./configure complain that there is no hdf5.h
>> header file.
>>
>> Let me explain first what I have done so far. The packages libhdf5-dev
>> and libhdf5-7 got replaced by there MPI counterparts. That are
>> libhdf5-openmpi-dev and libhdf5-openmpi-7 also version 1.8.8-9.
>> After that I tried to run
>> CC=mpicc.openmpi cmake . -DENABLE_PARALLEL=ON
>> -DCMAKE_INSTALL_PREFIX=$HOME/**local/
>> Unfortunately the output is:
>>
>>> ....
>>> -- Found CURL: /usr/lib/x86_64-linux-gnu/**libcurl.so (found version
>>> "7.27.0")
>>> CMake Error at CMakeLists.txt:572 (CHECK_LIBRARY_EXISTS):
>>> CHECK_LIBRARY_EXISTS Macro invoked with incorrect arguments for
>>> macro
>>> named: CHECK_LIBRARY_EXISTS
>>>
>>>
>>> CMake Error at CMakeLists.txt:576 (CHECK_LIBRARY_EXISTS):
>>> CHECK_LIBRARY_EXISTS Macro invoked with incorrect arguments for
>>> macro
>>> named: CHECK_LIBRARY_EXISTS
>>>
>>>
>>> -- Cannot find HDF5 library built with parallel support. Disabling
>>> parallel build.
>>> -- Looking for math.h
>>> -- Looking for math.h - found
>>> ....
>>>
>> Well, HDF5 with parallel IO support is installed. Why doesn't cmake
>> (2.8.9) as well as the configure script find it? Any ideas?
>>
>
> I have to explicitly give the location of the parallel hdf5 library, e.g.:
>
> -DENABLE_PARALLEL=ON
> -DHDF5_LIB=/usr/lib64/openmpi/**lib/libhdf5.so
> -DHDF5_HL_LIB=/usr/lib64/**openmpi/lib/libhdf5_hl.so
> -DHDF5_INCLUDE_DIR=/usr/**include/openmpi-x86_64
>
>
>
> --
> Orion Poplawski
> Technical Manager 303-415-9701 x222
> NWRA, Boulder/CoRA Office FAX: 303-415-9702
> 3380 Mitchell Lane orion@xxxxxxxx
> Boulder, CO 80301 http://www.nwra.com
>
>
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--
Gerry Creager
NSSL/CIMMS
405.325.6371
++++++++++++++++++++++
“Big whorls have little whorls,
That feed on their velocity;
And little whorls have lesser whorls,
And so on to viscosity.”
Lewis Fry Richardson (1881-1953)
