Thank you David,
I work with Snow Leopard
I got the following:
vara:~ ecor$ nc-config --all
This netCDF 4.3.2 has been built with the following features:
--cc -> gcc
--cflags -> -I/Users/ecor/local/include -I/Users/ecor/local/include
--libs -> -L/Users/ecor/local/lib -lnetcdf
--has-c++ -> no
--cxx ->
--has-c++4 -> no
--cxx4 ->
--fc ->
--fflags ->
--flibs ->
--has-f90 -> no
--has-dap -> yes
--has-nc2 -> yes
--has-nc4 -> yes
--has-hdf5 -> yes
--has-hdf4 -> no
--has-pnetcdf-> no
--prefix -> /Users/ecor/local
--includedir-> /Users/ecor/local/include
--version -> netCDF 4.3.2
vara:~ ecor$
On May 9, 2014, at 4:14 PM, David W. Pierce wrote:
> Hi Emanuele
>
> Barring bugs, it should not be possible to install ncdf4 correctly without it
> knowing where the libraries are. I think it's more likely that the netcdf
> library was not compiled with netcdf version 4 support enabled. When you do
> "nc-config --all" from your command line, what does it report?
>
> Also, am I right in assuming that this is a typo: "netcdf-4 and hfd4
> library"? You need the hdf5 library for modern (version 4) functionality, not
> the hdf4 library.
>
Sorry for typo, I wanted to say "hdf5"
Thank you
Emanuele
> Regards,
>
> --Dave
>
> On May 9, 2014 4:32 AM, "Emanuele Cordano" <emanuele.cordano@xxxxxxxxx> wrote:
> Dear all,
>
> I'm using the netcdf-4 libraries from R.
> I installed ncdf4 package
> (http://cran.r-project.org/web/packages/ncdf4/index.html) and also the
> netcf-4 land hfd4 library as written on
> http://www.unidata.ucar.edu/software/netcdf/docs/getting_and_building_netcdf.html#build_default.
>
> I launched an R script where a netCDF archive with weather data should be
> created but I obtain the following error:
> ....
> "Calling R_nc4_create for file
> /Users/ecor/Documents/workspace_new/activity_misc/RSUBDAILYCLIM/inst/trentino/data"
> Error in R_nc4_create: NetCDF: Can't add HDF5 file metadata (creation mode
> was 4096)
> Error in nc_create(ncpath, nclist, force_v4 = TRUE, verbose = TRUE) :
> Error in nc_create!
> In addition: There were 16 warnings (use warnings() to see them)
>
> It looks like ncdf4 does not find the netcdf-4 and hdf5 libraries.
> How can I link these libraries to the R ncdf4 package?
> Actually I have not found yet any instruction about this on the web.
>
> Thank you
> Regards
>
> Emanuele Cordano
>
>
>
>
>
> Emanuele Cordano
> Environmental Engineer / Ingegnere per l' Ambiente e il territorio nr. 3587
> (Albo A - Provincia di Trento)
> Fondazione Edmund Mach
> CRI - Reasearch and Innovation Center
> Agro-Eco-System Dynamic Platform
> Via Mach 1
> 38017 San Michele All'Adige (Italy)
> phone +39 0461 615397
> email: emanuele.cordano@xxxxxxxx ,emanuele.cordano@xxxxxxxxx
>
>
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