All,
I recently installed the free Community Edition of PGI 16.10 for macOS
and using it and the built-in mpich3, am trying to build a set of base
libraries for a weather model I work on.
Everything seemed to go okay, even HDF5 with parallel on (make check was
all good), but when I got to netCDF-C it threw this:
Making install in libsrc4
source='nc4file.c' object='libnetcdf4_la-nc4file.lo' libtool=yes \
DEPDIR=.deps depmode=pgcc /bin/sh ../depcomp \
/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I..
-I../include -DpgiFortran
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/zlib
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/szlib
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/jpeg
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/hdf5
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/hdf
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/uuid
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/netcdf
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/udunits2
-c -o libnetcdf4_la-nc4file.lo `test -f 'nc4file.c' || echo './'`nc4file.c
libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -DpgiFortran
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/zlib
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/szlib
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/jpeg
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/hdf5
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/hdf
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/uuid
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/netcdf
-I/Users/mathomp4/installed/MPI/pgi-16.10/mpich-3.2/Baselibs/5.0.2/Darwin/include/udunits2
-c nc4file.c -MD -o libnetcdf4_la-nc4file.o
PGC-S-0056-Attempt to call non-function (nc4file.c: 3058)
PGC-W-0095-Type cast required for this conversion (nc4file.c: 3058)
PGC/x86-64 OSX 16.10-0: compilation completed with severe errors
make[3]: *** [libnetcdf4_la-nc4file.lo] Error 1
make[2]: *** [install-recursive] Error 1
make[1]: *** [netcdf.install] Error 2
make: *** [install] Error 2
The line in question is pretty boring, an assert:
3050 /* This function will free all allocated metadata memory, and close
3051 the HDF5 file. The group that is passed in must be the root group
3052 of the file. */
3053 static int
3054 close_netcdf4_file(NC_HDF5_FILE_INFO_T *h5, int abort)
3055 {
3056 int retval = NC_NOERR;
3057
3058 assert(h5 && h5->root_grp);
3059 LOG((3, "%s: h5->path %s abort %d", __func__, h5->controller->path,
abort));
3060
and asserts like that seem to pepper that file.
Any ideas? I haven't tried 4.4.1.1 because nc4file.c didn't seem to
change much in close_netcdf4_file.
--
Matt Thompson, SSAI, Sr Scientific Programmer/Analyst
NASA GSFC, Global Modeling and Assimilation Office
Code 610.1, 8800 Greenbelt Rd, Greenbelt, MD 20771
Phone: 301-614-6712 Fax: 301-614-6246
http://science.gsfc.nasa.gov/sed/bio/matthew.thompson
