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[netCDF #TOS-768937]: netcdf-4.1.1 error



Hi Yaser,

> I configured and made netcdf with no error or problem, but I stuck with the
> following error in make check and I do not know what should I do????
> Please tell me what should I do.
> 
> *I am using intel compilers version 11.1.060 on rocks 5.4*

We can't duplicate this problem on our Linux platform with Intel 10.1.023
compilers using the current netCDF daily snapshot release, so we need more 
information about what version of netCDF you used and how you built the 
libraries.  Could you please send us the information listed here:

  http://www.unidata.ucar.edu/netcdf/docs/netcdf-install/Reporting-Problems.html

Thanks!

--Russ

> *** Testing HDF5/NetCDF-4 interoperability...
> *** Creating a HDF5 file with one var with two dimension scales...ok.
> *** Checking that HDF5 file can be read by netCDF-4, and adding an att...ok.
> *** Checking that one var, two dimscales, one att file can still be read by
> HDF5...ok.
> *** Creating a HDF5 file with one var and no dimension
> scales...ok.
> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread
> 0:
> #000: H5O.c line 717 in H5Oget_info_by_idx(): group not
> found
> major: Symbol
> table
> minor: Object not
> found
> #001: H5Gloc.c line 591 in H5G_loc_find_by_idx(): can't find
> object
> major: Symbol
> table
> minor: Object not
> found
> #002: H5Gtraverse.c line 929 in H5G_traverse(): internal path traversal
> failed
> major: Symbol
> table
> minor: Object not
> found
> #003: H5Gtraverse.c line 852 in H5G_traverse_real(): traversal operator
> failed
> major: Symbol
> table
> minor: Can't move to next iterator
> location
> #004: H5Gloc.c line 522 in H5G_loc_find_by_idx_cb(): link not
> found
> major: Symbol
> table
> minor: Object not
> found
> #005: H5Gobj.c line 1215 in H5G_obj_lookup_by_idx(): no creation order
> index to query
> major: Symbol
> table
> minor: Bad
> value
> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread
> 0:
> #000: H5O.c line 717 in H5Oget_info_by_idx(): group not
> found
> major: Symbol
> table
> minor: Object not
> found
> #001: H5Gloc.c line 591 in H5G_loc_find_by_idx(): can't find
> object
> major: Symbol
> table
> minor: Object not
> found
> #002: H5Gtraverse.c line 929 in H5G_traverse(): internal path traversal
> failed
> major: Symbol
> table
> minor: Object not
> found
> #003: H5Gtraverse.c line 852 in H5G_traverse_real(): traversal operator
> failed
> major: Symbol
> table
> minor: Can't move to next iterator
> location
> #004: H5Gloc.c line 522 in H5G_loc_find_by_idx_cb(): link not
> found
> major: Symbol
> table
> minor: Object not
> found
> #005: H5Gobj.c line 1215 in H5G_obj_lookup_by_idx(): no creation order
> index to query
> major: Symbol
> table
> minor: Bad
> value
> *** Creating a HDF5 file with one var and no dimension scales, without
> creation ordering...ok.
> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread
> 0:
> #000: H5O.c line 717 in H5Oget_info_by_idx(): group not
> found
> major: Symbol
> table
> minor: Object not
> found
> #001: H5Gloc.c line 591 in H5G_loc_find_by_idx(): can't find
> object
> major: Symbol
> table
> minor: Object not
> found
> #002: H5Gtraverse.c line 929 in H5G_traverse(): internal path traversal
> failed
> major: Symbol
> table
> minor: Object not
> found
> #003: H5Gtraverse.c line 852 in H5G_traverse_real(): traversal operator
> failed
> major: Symbol
> table
> minor: Can't move to next iterator
> location
> #004: H5Gloc.c line 522 in H5G_loc_find_by_idx_cb(): link not
> found
> major: Symbol
> table
> minor: Object not
> found
> #005: H5Gobj.c line 1215 in H5G_obj_lookup_by_idx(): no creation order
> index to query
> major: Symbol
> table
> minor: Bad
> value
> 
> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread
> 0:
> #000: H5O.c line 717 in H5Oget_info_by_idx(): group not
> found
> major: Symbol
> table
> minor: Object not
> found
> #001: H5Gloc.c line 591 in H5G_loc_find_by_idx(): can't find
> object
> major: Symbol
> table
> minor: Object not
> found
> #002: H5Gtraverse.c line 929 in H5G_traverse(): internal path traversal
> failed
> major: Symbol
> table
> minor: Object not
> found
> #003: H5Gtraverse.c line 852 in H5G_traverse_real(): traversal operator
> failed
> major: Symbol
> table
> minor: Can't move to next iterator
> location
> #004: H5Gloc.c line 522 in H5G_loc_find_by_idx_cb(): link not
> found
> major: Symbol
> table
> minor: Object not
> found
> #005: H5Gobj.c line 1215 in H5G_obj_lookup_by_idx(): no creation order
> index to query
> major: Symbol
> table
> minor: Bad
> value
> 
> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread
> 0:
> #000: H5O.c line 717 in H5Oget_info_by_idx(): group not
> found
> major: Symbol
> table
> minor: Object not
> found
> #001: H5Gloc.c line 591 in H5G_loc_find_by_idx(): can't find
> object
> major: Symbol
> table
> minor: Object not
> found
> #002: H5Gtraverse.c line 929 in H5G_traverse(): internal path traversal
> failed
> major: Symbol
> table
> minor: Object not
> found
> #003: H5Gtraverse.c line 852 in H5G_traverse_real(): traversal operator
> failed
> major: Symbol
> table
> minor: Can't move to next iterator
> location
> #004: H5Gloc.c line 522 in H5G_loc_find_by_idx_cb(): link not
> found
> major: Symbol
> table
> minor: Object not
> found
> #005: H5Gobj.c line 1215 in H5G_obj_lookup_by_idx(): no creation order
> index to query
> major: Symbol
> table
> minor: Bad
> value
> 
> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread
> 0:
> #000: H5O.c line 717 in H5Oget_info_by_idx(): group not
> found
> major: Symbol
> table
> minor: Object not
> found
> #001: H5Gloc.c line 591 in H5G_loc_find_by_idx(): can't find
> object
> major: Symbol
> table
> minor: Object not
> found
> #002: H5Gtraverse.c line 929 in H5G_traverse(): internal path traversal
> failed
> major: Symbol
> table
> minor: Object not
> found
> #003: H5Gtraverse.c line 852 in H5G_traverse_real(): traversal operator
> failed
> major: Symbol
> table
> minor: Can't move to next iterator
> location
> #004: H5Gloc.c line 522 in H5G_loc_find_by_idx_cb(): link not
> found
> major: Symbol
> table
> minor: Object not
> found
> #005: H5Gobj.c line 1215 in H5G_obj_lookup_by_idx(): no creation order
> index to query
> major: Symbol
> table
> minor: Bad value
> 
> 
> 
> 
> Best Regards,
> Yaser
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: TOS-768937
Department: Support netCDF
Priority: Normal
Status: Closed