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[netCDF #EPQ-640599]: make check failed

Hi Ben,

From the looks of you make_check.out file, everything compiled correctly and is 
good. Now I see what happened. So you did a make check install first, which 
will compile netCDF, check it for errors, and install it. When you ran make 
check the second time, the code behind make check could not find the compiled 
libraries under your source directories because they had already been moved out 
of there to some other location on your disk (make check specifically looks in 
some temporary folders for the compiled libraries - once you make install, 
those libraries are taken out of the temp folders, and so make check cannot 
find them).

Things look good to me!

Sean

> Hi Sean,
> 
> Thank you for your help with this. Here are the make.out and make_check.out
> files.
> 
> Hope you're well,
> 
> Ben
> 
> address@hidden> wrote:
> 
> > Greetings Benjamin,
> >
> > Would you kindly send the full output from make and make check? First, do
> >
> > make clean
> >
> > Then, re-run the configure script as you did previously. Next, do
> >
> > make &> make.out
> >
> > and after that, do
> >
> > make check &> make_check.out
> >
> > Then, would you mind sending the make.out and make_check.out files? They
> > will be of much help. I looks like the apple gcc-4 is having issues finding
> > the standard c libraries and header files, but the make and make check logs
> > will tell us for sure.
> >
> > Thanks so much!
> >
> > Sean
> >
> > > Full Name: Benjamin Johnson
> > > Email Address: address@hidden
> > > Organization: University of Maryland-College Park
> > > Package Version: netcdf 4.1.3
> > > Operating System: Mac OS X Lion
> > > Hardware: Intel processor
> > > Description of problem: I am trying to configure netcdf to run on Mac OS
> > X Lion's x86_64 architecture (my config.log is attached). Before installing
> > I set my environment variables:
> > >
> > > export CFLAG=-m64
> > > export FFLAG=-m64
> > >
> > > Then ran:
> > >
> > > sudo ./configure --prefix=/lib --disable-netcdf-4 --enable-shared
> > > sudo make check install
> > > sudo make check
> > >
> > > Running the last command produced the following:
> > >
> > > make check
> > > Making check in include
> > > make[1]: Nothing to be done for `check'.
> > > Making check in libdispatch
> > > make[1]: Nothing to be done for `check'.
> > > Making check in oc
> > > make[1]: Nothing to be done for `check'.
> > > Making check in libsrc
> > > make[1]: Nothing to be done for `check'.
> > > Making check in libdap2
> > > make[1]: Nothing to be done for `check'.
> > > Making check in liblib
> > > make[1]: Nothing to be done for `check'.
> > > Making check in nctest
> > > make  nctest tst_rename
> > > make[2]: `nctest' is up to date.
> > > make[2]: `tst_rename' is up to date.
> > > make  check-TESTS
> > > Testing V2 API with 2 different netCDF formats.
> > >
> > >
> > > Switching to netCDF classic format.
> > > *** Testing nccreate ...        *** test_nccreate: nccreate failed to
> > NC_CLOBBER
> > > *** Testing ncopen ...          *** could not create temp file
> > > *** Testing ncredef ...         *** test_ncredef: ncopen failed
> > > *** Testing ncendef ...         *** test_ncendef: ncopen failed
> > > *** Testing ncclose ...         *** test_ncclose: ncopen failed
> > > *** Testing ncinquire ...       *** test_ncinquire: ncopen failed
> > > *** Testing ncsync ...          *** test_ncsync: ncopen in NC_WRITE mode
> > failed
> > > *** Testing ncabort ...         *** test_ncabort: ncopen failed
> > > *** Testing ncdimdef ...        *** test_ncdimdef: ncopen failed
> > > *** Testing ncdimid ...         *** test_ncdimid: ncopen failed
> > > *** Testing ncdiminq ...        *** test_ncdiminq: ncopen failed
> > > *** Testing ncdimrename ...     *** test_ncdimrename: ncopen failed
> > > *** Testing ncvardef ...        *** test_ncvardef: ncopen failed
> > > *** Testing ncvarid ...         *** test_ncvarid: ncopen failed
> > > *** Testing ncvarinq ...        *** test_ncvarinq: ncopen failed
> > > *** Testing ncvarput1 ...       *** test_ncvarput1: ncopen failed
> > > *** Testing ncvarget1 ...       *** test_ncvarget1: ncopen failed
> > > *** Testing ncvarput ...        *** test_ncvarput: ncopen failed
> > > *** Testing ncvarget ...        *** test_ncvarget: ncopen failed
> > > *** Testing ncvarputg ...       *** test_ncvarputg: ncopen failed
> > > *** Testing ncvargetg ...       *** test_ncvargetg: ncopen failed
> > > *** Testing ncrecinq ...        *** test_ncrecinq: ncopen failed
> > > *** Testing ncrecput ...        *** test_ncrecput: ncopen failed
> > > *** Testing ncattput ...        *** test_ncattput: ncopen failed
> > > *** Testing ncattinq ...        *** test_ncattinq: ncopen failed
> > > *** Testing ncattget ...        *** test_ncattget: ncopen failed
> > > *** Testing ncattcopy ...       *** test_ncattcopy: ncopen failed
> > > *** Testing ncattname ...       *** test_ncattname: ncopen failed
> > > *** Testing ncattrename ...     *** test_ncattrename: ncopen failed
> > > *** Testing ncattdel ...        *** test_ncattdel: ncopen failed
> > > *** Testing nctypelen ...       ok ***
> > >
> > >
> > > Switching to 64-bit offset format.
> > > *** Testing nccreate ...        *** test_nccreate: nccreate failed to
> > NC_CLOBBER
> > > *** Testing ncopen ...          *** could not create temp file
> > > *** Testing ncredef ...         *** test_ncredef: ncopen failed
> > > *** Testing ncendef ...         *** test_ncendef: ncopen failed
> > > *** Testing ncclose ...         *** test_ncclose: ncopen failed
> > > *** Testing ncinquire ...       *** test_ncinquire: ncopen failed
> > > *** Testing ncsync ...          *** test_ncsync: ncopen in NC_WRITE mode
> > failed
> > > *** Testing ncabort ...         *** test_ncabort: ncopen failed
> > > *** Testing ncdimdef ...        *** test_ncdimdef: ncopen failed
> > > *** Testing ncdimid ...         *** test_ncdimid: ncopen failed
> > > *** Testing ncdiminq ...        *** test_ncdiminq: ncopen failed
> > > *** Testing ncdimrename ...     *** test_ncdimrename: ncopen failed
> > > *** Testing ncvardef ...        *** test_ncvardef: ncopen failed
> > > *** Testing ncvarid ...         *** test_ncvarid: ncopen failed
> > > *** Testing ncvarinq ...        *** test_ncvarinq: ncopen failed
> > > *** Testing ncvarput1 ...       *** test_ncvarput1: ncopen failed
> > > *** Testing ncvarget1 ...       *** test_ncvarget1: ncopen failed
> > > *** Testing ncvarput ...        *** test_ncvarput: ncopen failed
> > > *** Testing ncvarget ...        *** test_ncvarget: ncopen failed
> > > *** Testing ncvarputg ...       *** test_ncvarputg: ncopen failed
> > > *** Testing ncvargetg ...       *** test_ncvargetg: ncopen failed
> > > *** Testing ncrecinq ...        *** test_ncrecinq: ncopen failed
> > > *** Testing ncrecput ...        *** test_ncrecput: ncopen failed
> > > *** Testing ncrecget ...        *** test_ncrecget: ncopen failed
> > > *** Testing ncvarrename ...     *** test_ncvarrename: ncopen failed
> > > *** Testing ncattput ...        *** test_ncattput: ncopen failed
> > > *** Testing ncattinq ...        *** test_ncattinq: ncopen failed
> > > *** Testing ncattget ...        *** test_ncattget: ncopen failed
> > > *** Testing ncattcopy ...       *** test_ncattcopy: ncopen failed
> > > *** Testing ncattname ...       *** test_ncattname: ncopen failed
> > > *** Testing ncattrename ...     *** test_ncattrename: ncopen failed
> > > *** Testing ncattdel ...        *** test_ncattdel: ncopen failed
> > > *** Testing nctypelen ...       ok ***
> > >
> > > Total number of failures: 64
> > > nctest FAILURE!!!
> > > FAIL: nctest
> > >
> > > *** Testing v3/v4 API versions of some v2 tests.
> > > *** testing simple dim rename...Sorry! Unexpected result, tst_rename.c,
> > line: 219
> > > FAIL: tst_rename
> > > PASS: compare_test_files.sh
> > > ================================================
> > > 2 of 3 tests failed
> > > Please report to address@hidden
> > > ================================================
> > > make[2]: *** [check-TESTS] Error 1
> > > make[1]: *** [check-am] Error 2
> > > make: *** [check-recursive] Error 1
> > >
> > >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: EPQ-640599
> > Department: Support netCDF
> > Priority: Normal
> > Status: Open
> >
> >
> 
> 


Ticket Details
===================
Ticket ID: EPQ-640599
Department: Support netCDF
Priority: Normal
Status: Open