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[netCDF #JZT-105309]: neCDF 4.3.0 installation issue - Can't find or link to the hdf5 library

Peter,

One more thing I should have requested.  Could you send the entire netCDF-4.3.0
config.log produced by running the netCDF configure script?  It provides more
detailed information that might give us an idea why the installed hdf5-1.8.9
library is not being found ...

--Russ

> > I am trying to install netCDF 4.3.0 on a Scientific Linux 6.4  system
> > with Intel studio c and fortran compilers but have hit a problem, wonder
> > if you can help resolve this.
> >
> > I used the following commands (in a script) to install hdf5-1.8.9, which
> > appears to have gone through the "make check" without major problems.
> >
> > When it comes down to install netCDF 4.3.0, it then complains with the
> > above error.
> >
> > As you can see from the script, I have already exported the environment
> > variables CPPFLAGS, LDFLAGS, and LD_LIBRARY_PATH to point to the installed
> > location on hdf5-1.8.9.  I have also confirmed the hdf5 installed location
> > being correct.
> >
> > However the fault persists.  I have attached the log on this installation.
> 
> I can't duplicate the problem here, using HDF5-1.8.9, netCDF 4.3.0, and a 
> shell
> script very similar to yours, except that I use gcc rather than Intel 
> compilers, and
> I didn't enable fortran or cxx in the HDF libraries (those APIs aren't used by
> netCDF-4).  I note that you repeated the HDF5-1.8.9 library location in the
> first and third position of your LD_LIBRARY_PATH and LD_RUN_PATH env
> variables, but that shouldn't cause a problem.
> 
> Does it all work if you use gcc instead of icc?
> 
> --Russ
> 
> 
> > Much grateful if anyone can advise on this.
> >
> > Regards,
> >
> > Peter Chiu
> >
> > STFC Rutherford Appleton Laboratory
> > UK
> > echo "Enable intel 64 compilers"
> > #intel64
> > source /opt/intel/bin/compilervars.sh intel64
> >
> > CC=/opt/intel/composer_xe_2013.0.079/bin/intel64/icc
> >
> > FC=/opt/intel/composer_xe_2013.0.079/bin/intel64/ifort
> >
> > CXX=/opt/intel/composer_xe_2013.0.079/bin/intel64/icpc
> >
> > export CC FC CXX
> > ls $CC $FC $CXX
> >
> > echo "Start installing hdf5-1.8.9 with intel"
> > cd /usr/local/kits/netcdf-src/hdf5-1.8.9
> >
> > make distclean
> >
> > ./configure --prefix=/usr/local/hdf5-1.8.9intel 
> > --with-szlib=/usr/local/szip \
> > --with-zlib=/usr/local/zlib1.2.7 --enable-fortran --enable-cxx 
> > --disable-shared
> > echo; echo "`date`: make"
> > make
> > echo; echo "`date`: make check"
> > make check
> > echo; echo "`date`: make check install"
> > make install
> >
> > echo
> >
> > echo "Set CPPFLAGS..."
> > CPPFLAGS='-I/usr/local/hdf5-1.8.9intel/include'
> >
> > ls /usr/local/hdf5-1.8.9intel/include /usr/local/szip/include 
> > /usr/local/zlib1.2.7/include
> >
> > echo "Set LDFLAGS..."
> > LDFLAGS='-L/usr/local/hdf5-1.8.9intel/lib'
> >
> > ls /opt/intel/composer_xe_2013.0.079/compiler/lib/intel64 
> > /usr/local/hdf5-1.8.9intel/lib /usr/local/szip/lib /usr/local/zlib1.2.7/lib
> > export CPPFLAGS LDFLAGS
> >
> > LD_LIBRARY_PATH="/usr/local/hdf5-1.8.9intel/lib:/opt/intel/composer_xe_2013.0.079/compiler/lib/intel64:/usr/local/hdf5-1.8.9intel/lib:/usr/local/szip/lib:/usr/local/zlib1.2.7/lib:$LD_LIBRARY_PATH"
> > LD_RUN_PATH="/usr/local/hdf5-1.8.9intel/lib:/opt/intel/composer_xe_2013.0.079/compiler/lib/intel64:/usr/local/hdf5-1.8.9intel/lib:/usr/local/szip/lib:/usr/local/zlib1.2.7/lib:$LD_RUN_PATH"
> >
> > export LD_LIBRARY_PATH LD_RUN_PATH
> >
> > cd /usr/local/kits/netcdf-src/netcdf-4.3.0
> >
> > make distclean
> >
> > ./configure --prefix=/usr/local/netcdf-4.3.0ifort64-hdf5-1.8.9 
> > --disable-dap-remote-tests
> >
> > make
> > make check
> >
> >
> > --
> > Scanned by iCritical.
> >
> >
> >
> 
> Russ Rew                                         UCAR Unidata Program
> address@hidden                      http://www.unidata.ucar.edu
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: JZT-105309
Department: Support netCDF
Priority: Normal
Status: Closed