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[netCDF #ZMJ-285878]: (No Subject)

Hi Fereshte,

> i am new with linux environment. i use fedora 16 i686 release
> i need to install netcdf4.2 with "HDF5,szip, zlib and curl
> i searched a appropriate way for this aim and i mixed different way and got
> following way:
> 
> 1-
> 
> Cd /home/fkomijani/zlib 1.2.7
> 
> ./configure --prefix=/home/fkomijani/NETCD4.2
> 
> make all install
> 
> 2-
> 
> Cd /home/fkomijani/szip 2.1
> 
> ./configure --prefix=/home/fkomijani/NETCD4.2
> 
> make check install
> 
> 
> 3-
> 
> cd /home/fkomijani/HDF5 1.8.9
> 
> ./configure --with-zlib=/home/fkomijani/NETCD4.2
> --with-szlib=/home/fkomijani/NETCD4.2 --prefix=/home/fkomijani/NETCD4.2
> 
> make check install
> 
> 4-
> 
> cd /home/fkomijani/curl 7.31
> 
> ./configure --prefix=/home/fkomijani/NETCD4.2
> --with-zlib=/home/fkomijani/NETCD4.2 --with-pic
> make check install

Everything looks fine above this point, but there are problems with 
step 5, below.

> 5-
> 
> cd /home/fkomijani/netcdf4.2.1.1
> 
> CPPFLAGS=-I/home/fkomijani/NETCD4.2/ include
> LDFLAGS=L/home/fkomijani/NETCD4.2/lib ./configure
> --with-hdf5=/home/fkomijani/NETCD4.2
> 
> --with-zlib=/home/fkomijani/NETCD4.2 --with-szlib=/home/fkomijani/NETCD4.2
> --prefix=/home/fkomijani/NETCD4.2 --enable-netcdf-4
> 
> make check install

The netcdf4.2.1.1 and later configure script just uses CPPFLAGS
and LDFLAGS to specify where libraries are found.  The directories
provided by --with-hdf5=, --with-zlib=, or --with-szlib= options
are just ignored.  Furthermore, the "--enable-netcdf-4" is the default
if a usable HDF5 library is found in the directories given by CPPFLAGS
and LDFLAGS, so is not needed.  So the above could just be invoked as

  CPPFLAGS=-I/home/fkomijani/NETCD4.2/include
  LDFLAGS=-L/home/fkomijani/NETCD4.2/lib 
  ./configure --prefix=/home/fkomijani/NETCD4.2

Note I've corrected the extra space you had in 

> CPPFLAGS=-I/home/fkomijani/NETCD4.2/ include

and the missing "-" you had in 

> LDFLAGS=L/home/fkomijani/NETCD4.2/lib ./configure

> 6-
> 
> cd /home/fkomijani/netcdf-fortran-4.2
> 
> ./configure --prefix=/home/fkomijani/NETCDF4.2
> 
> make check
> 
> make install

The configure statement above is not quite enough to allow
the shared libraries to be found by the Fortran compiler.  You
also need to specify the environment variable 

  LD_LIBRARY_PATH=/home/fkomijani/NETCDF4.2/lib:${LD_LIBRARY_PATH}

unless you have configured your system to always look in that 
directory by default for shared libraries.  Or you could define
this environment variable in your .bashrc and source that, as you 
describe below.

> 7- and then add 2 following sentence in.bashrc:
> 
> PATH=/home/fkomijani/NETCD4.2/bin:$PATH; export PATH
> 
> export LD_LIBRARY_PATH=/home/fkomijani/NETCD4.2/lib:${LD_LIBRARY_PATH}
> 
> after step 4 i got following errors:
> 
> /bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -Wno-system-headers
> -L/home/fkomijani/NETCD4.2/lib -o usercertinmem usercertinmem.o ../../lib/
> libcurl.la
> libtool: link: gcc -O2 -Wno-system-headers -o .libs/usercertinmem
> usercertinmem.o  -L/home/fkomijani/NETCD4.2/lib ../../lib/.libs/libcurl.so
> -Wl,-rpath -Wl,/home/fkomijani/NETCD4.2/lib
> /usr/bin/ld: usercertinmem.o: undefined reference to symbol
> 'SSL_CTX_use_RSAPrivateKey'
> /usr/bin/ld: note: 'SSL_CTX_use_RSAPrivateKey' is defined in DSO
> /usr/lib/libssl.so.10 so try adding it to the linker command line
> /usr/lib/libssl.so.10: could not read symbols: Invalid operation
> collect2: ld returned 1 exit status
> make[2]: *** [usercertinmem] Error 1
> make[2]: Leaving directory `/home/fkomijani/curl-7.31.0/docs/examples'
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory `/home/fkomijani/curl-7.31.0/docs/examples'
> make: *** [examples] Error 2
> 
> would you please tell me that this way is correct or not?

The above error looks like a problem with running "make check" for the
curl library, rather than a netCDF problem.  I'm not familiar with all
the options for configuring and building libcurl, so you may need to
consult curl support to resolve that problem, if it persists.

--Russ
  
Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: ZMJ-285878
Department: Support netCDF
Priority: Normal
Status: Closed