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[netCDF #KNN-483520]: Reporting Problems: netcdf-fortran-4.2 with gfortran-4.8.1 compiler (gcc version 4.8.1)

Hi Dessy,

The gfortran error you are getting

    USE netcdf
        1
    Fatal Error: File 'netcdf.mod' opened at (1) is not a GNU Fortran module 
file
    make[1]: *** [cf90_routines.o] Error 1
    make: *** [linux-gfort] Error 2

indicates that the netcdf.mod file find in /usr/local/include was not compiled
with the gfortan compiler, or was compiled with a much older version of gfortran
that had a different format for module files.  Check the creation date on the
netcdf.mod file and see to make sure it is more recent than your netCDF 4.2.1.1
library files in /usr/local/lib.  If not, it's probably left over from an 
earlier
install, possibly with a different compiler.

The netCDF Fortran package is now separate from the netCDF C package, so you 
have
to build and install it separately, *after* you have installed the netCDF C 
library.

If you need to rebuild and install the netCDF 4.2 release from Unidata or the 
version 4.4.0-rc1 release candidate (either is compatible with your netCDF C
library), follow these building and installation instructions:

  http://www.unidata.ucar.edu/netcdf/docs/netcdf-fortran-install.html

--Russ

> I would like to reporting problems as followings:
> Currently I am trying to use netcdf-4.2.1.1 on my mac OS X 10.8.5 with 
> compiler gfortran-4.8.1 (gcc version 4.8.1)
> We need netcdf to support us in ocean model of COHERENS V2.4.1, but it failed 
> in compiling, as followings:
> 
> Dessys-MacBook-Pro:models dessy$ ln -s /Users/dessy/coherens/V2.4.1/ COHERENS2
> Dessys-MacBook-Pro:models dessy$ COHERENS2/install_test
> Dessys-MacBook-Pro:models dessy$ make linux-gfort
> make coherens "FC=gfortran" "FCOPTS= -O3" "FCDEFS=" "FCDEBUG=" \
> "CPP=" "CPPF=cpp" "CPPOPTS=-traditional-cpp" "CPPDEFS=-DCDF"
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/currents.f90 
> -o currents.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/syspars.f90 -o 
> syspars.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/datatypes.f90 
> -o datatypes.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/density.f90 -o 
> density.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/depths.f90 -o 
> depths.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/diffusion.f90 
> -o diffusion.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/fluxes.f90 -o 
> fluxes.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/grid.f90 -o 
> grid.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/gridpars.f90 
> -o gridpars.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/iopars.f90 -o 
> iopars.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/meteo.f90 -o 
> meteo.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/modids.f90 -o 
> modids.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/nestgrids.f90 
> -o nestgrids.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/obconds.f90 -o 
> obconds.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/optics.f90 -o 
> optics.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/paralpars.f90 
> -o paralpars.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/physpars.f90 
> -o physpars.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/relaxation.f90 
> -o relaxation.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/switches.f90 
> -o switches.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/tide.f90 -o 
> tide.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/timepars.f90 
> -o timepars.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/turbpars.f90 
> -o turbpars.o
> gfortran -I/usr/local/include   -O3   -c COHERENS2/code/source/turbulence.f90 
> -o turbulence.o
> gfortran -I/usr/local/include   -O3   -c 
> COHERENS2/code/source/utility_routines.f90 -o utility_routines.o
> cpp  -traditional-cpp -DCDF COHERENS2/code/source/error_routines.F90 
> ./error_routines.f90
> COHERENS2/code/source/error_routines.F90:178:27: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> WRITE (ioerr,'(A)') '  Interval must contain an integer number of&
> ^
> COHERENS2/code/source/error_routines.F90:179:41: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> & space steps'
> ^
> COHERENS2/code/source/error_routines.F90:275:27: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> WRITE (ioerr,'(A)') 'Interval must contain an integer number of&
> ^
> COHERENS2/code/source/error_routines.F90:276:41: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> & space steps'
> ^
> COHERENS2/code/source/error_routines.F90:346:27: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> WRITE (ioerr,'(A)') '  Interval must contain an integer number of time&
> ^
> COHERENS2/code/source/error_routines.F90:347:34: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> & steps'
> ^
> COHERENS2/code/source/error_routines.F90:2410:67: warning: missing 
> terminating ' character
> [-Winvalid-pp-token]
> !                        .TRUE. or lower than 'maxval if 'matchmax' is .FALSE.
> ^
> 7 warnings generated.
> gfortran -I/usr/local/include   -O3   -c ./error_routines.f90 -o 
> error_routines.o
> gfortran -I/usr/local/include   -O3   -c 
> COHERENS2/code/source/datatypes_init.f90 -o datatypes_init.o
> gfortran -I/usr/local/include   -O3   -c 
> COHERENS2/code/biology/source/biovars_routines.f90 -o biovars_routines.o
> gfortran -I/usr/local/include   -O3   -c 
> COHERENS2/code/source/modvars_routines.f90 -o modvars_routines.o
> gfortran -I/usr/local/include   -O3   -c 
> COHERENS2/code/source/time_routines.f90 -o time_routines.o
> gfortran -I/usr/local/include   -O3   -c 
> COHERENS2/code/source/array_interp.f90 -o array_interp.o
> cpp  -traditional-cpp -DCDF COHERENS2/code/source/cf90_routines.F90 
> ./cf90_routines.f90
> COHERENS2/code/source/cf90_routines.F90:2183:48: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> !*dimids*  INTEGER Returned IDs of the variable's dimensions
> ^
> COHERENS2/code/source/cf90_routines.F90:3489:37: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> !*curname* CHAR    Current attribute's name
> ^
> COHERENS2/code/source/cf90_routines.F90:3490:33: warning: missing terminating 
> ' character
> [-Winvalid-pp-token]
> !*newname* CHAR    New attribute's name
> ^
> 3 warnings generated.
> gfortran -I/usr/local/include   -O3   -c ./cf90_routines.f90 -o 
> cf90_routines.o
> COHERENS2/code/source/cf90_routines.F90:37.7:
> 
> USE netcdf
> 1
> Fatal Error: File 'netcdf.mod' opened at (1) is not a GNU Fortran module file
> make[1]: *** [cf90_routines.o] Error 1
> make: *** [linux-gfort] Error 2
> 
> Following I include the needed information:
> 1. I have installed netcdf: v4.2.1 (netcdf library version 4.2.1.1 of Jan 20 
> 2013 12:38:00 $)
> 2. Also install hdf5-1.8.11 and zlib-1.2.8
> 3. File of configure and config.log
> 
> I would be highly appreciate for any suggestion to solve my problem.
> Thank you very much for your help.
> 
> Best regards,
> 
> dessy
> 
> --
> 
> 
> 
Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: KNN-483520
Department: Support netCDF
Priority: Normal
Status: Closed