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[netCDF #TRL-392354]: netcdf-4 build fails

Hi,

> I did what you suggested and now get another new error;

Great, that's progress!

> per@UiT-HP-Z620:~/software/netcdf-fortran-4.4.0$ make check
> Making check in fortran
> make[1]: Entering directory `/home/per/software/netcdf-fortran-4.4.0/fortran'
> gfortran  -g -O2 -c -o netcdf.o  netcdf.f90
> netcdf_overloads.f90:13.52:
> Included at netcdf.f90:48:
> 
> nf90_def_var_fill_FourByteReal, &
> 1
> Error: Procedure 'nf90_def_var_fill_eightbytereal' in generic interface 
> 'nf90_def_var_fill' at (1) is neither function nor subroutine
> netcdf_overloads.f90:22.52:
> Included at netcdf.f90:48:
> 
> nf90_inq_var_fill_FourByteReal, &
> 1
> Error: Procedure 'nf90_inq_var_fill_eightbytereal' in generic interface 
> 'nf90_inq_var_fill' at (1) is neither function nor subroutine
> netcdf_text_variables.f90:60.93:
> Included at netcdf.f90:56:
> 
> numDims  ) = (/ 1, (product(localCount(:counter)), counter = 1, numDims - 1) 
> /)
> 1
> Warning: DO loop at (1) will be executed zero times
> make[1]: *** [netcdf.o] Error 1
> make[1]: Leaving directory `/home/per/software/netcdf-fortran-4.4.0/fortran'
> make: *** [check-recursive] Error 1
> 
> I read your post on this error, Russ, where you wrote
> "I've fixed this with Richard Weed's modifications and tested the result."
> Searching for that modification I was baffled by the amount of mods 
> necessary, and didn't want to try it before consulting you.
> Is that what you suggest that I do next, or do you see another way?

If you're looking at all the changes between the netcdf-fortran-4.4.0 release
and the release candidate netcdf-fortran-4.4.1-rc1, then yes, there were many
modifications unrelated to the bug that caused the error you are now seeing,
many of them related to making the software build under Windows with cmake.

The modifications for just the error you are seeing are fairly small:

  
https://github.com/Unidata/netcdf-fortran/commit/72adb400d41b290a5f099e401ca3b5d22833f161

so you could probably apply them to the 4.4.0 release and get things working,
but we haven't tested that change in isolation.  So I would instead recommend
just getting the 4.4.1-rc1 pre-release, by clicking "Download as a Zip file" 
on the right of the page:

  https://github.com/Unidata/netcdf-fortran/tree/v4.4.1-rc1
  
Alternatively, you could wait for the 4.4.1 release, which will be available 
soon (not sure how soon, but we don't plan another release candidate).

--Russ

> All the best!
> //Pär
> 
> 
> _______________________________________
> From: Unidata netCDF Support <address@hidden>
> Sent: 21 August 2014 17:43
> To: Jansson Pær
> Cc: address@hidden; Jansson Pær
> Subject: [netCDF #TRL-392354]: netcdf-4 build fails
> 
> Hi Jannson,
> 
> I've just gotten back from vacation myself and will jump in on this
> one, as I think I see what's going wrong.
> 
> You have set
> 
> LIBS='-lz -ldl -lhdf5 -lhdf5_hl -lnetcdf'
> 
> but I think you need the libraries in a different order, as there are
> dependecies, for example hdf5_hl functions call hdf5 functions.
> 
> Try instead
> 
> LIBS='-lnetcdf -lhdf5_hl  -lhdf5 -lz -ldl'
> 
> --Russ
> 
> > Actually, the vacation was quite exhausting (moving from the house in 
> > Sweden to Northern Norway...), nut now we're settling nicely here.
> >
> > I added "-lhdf5_hl" to the LIBS, and now get a new error (see attached 
> > error_messages.txt).
> > I also checked whether the high-level commands were included, by checking 
> > the libhdf5.settings file, that I found in /usr/lib/x86_64-linux-gnu 
> > folder, and as far as I can tell they are included. (line 54  in the 
> > attached libhdf5.settings). Again I include the "config.log" and the error 
> > messages (this time in the "error_messages.txt").
> > The configure options;
> >
> > export CPPFLAGS="-I/usr/include"
> > export LDFLAGS="-L/usr/lib"
> > export LIBS="-lz -ldl -lhdf5 -lhdf5_hl -lnetcdf"
> > export CC=mpicc
> > export F90=mpif90
> > export FC=mpif90
> > ./configure --enable-parallel-tests --disable-shared
> >
> > Thank so much for your patience with this!
> > /Pär
> >
> >
> >
> > ________________________________________
> > From: Unidata netCDF Support <address@hidden>
> > Sent: 20 August 2014 18:13
> > To: Jansson Pær
> > Cc: Jansson Pær
> > Subject: [netCDF #TRL-392354]: netcdf-4 build fails
> >
> > Hi,
> >
> > I hope it was a restful vacation!  The errors themselves seem 
> > straightforward; libraries providing H5DSis_scale, H5DSset_scale, etc, are 
> > not being linked against.  Checking on my system, these are provided by the 
> > hdf5 high-level library.  So, I would adjust your LIBS to include 
> > '-lhdf5_hl'.  This assumes that libhdf5_hl is installed by 
> > libhdf5-openmpi-7; I'm not sure if that's the case but hopefully!  If it's 
> > not, or if adding -lhdf5_hl doesn't solve this issue, let me know and we'll 
> > go from there.
> >
> > I hope this helps, have a great day,
> >
> > -Ward
> >
> > > Hi!
> > > Returning to the failing netcdf-fortran build on my Ubuntu workstation, 
> > > after a short vacation.
> > > I'm trying to install netcdf-fortran with parallel support.
> > > I successfully installed hdf5 (apt-get install libhdf5-openmpi-7)
> > > Then installed necdf-4.3.2
> > > When I try to install netcdf-fortran I get the following error, which I 
> > > don't understand...
> > > Including my config.log file and some of our old conversation.
> > > All the best!
> > > /Pär
> > >
> > >
> > > This is how I configured;
> > > export CPPFLAGS="-I/usr/include"
> > > export LDFLAGS="-L/usr/lib"
> > > export LIBS="-lnetcdf -lhdf5 -ldl"
> > > export CC=mpicc
> > > export FC=mpif90
> > > ./configure --enable-parallel-tests --disable-shared
> > > make check
> > >
> > > And the new error message;
> > > per@UiT-HP-Z620:~/software/netcdf-fortran-4.4.0$<mailto:per@UiT-HP-Z620:~/software/netcdf-fortran-4.4.0$>
> > >  make check
> > > Making check in fortran
> > > make[1]: Entering directory 
> > > `/home/per/software/netcdf-fortran-4.4.0/fortran'
> > > make  check-am
> > > make[2]: Entering directory 
> > > `/home/per/software/netcdf-fortran-4.4.0/fortran'
> > > make[2]: Nothing to be done for `check-am'.
> > > make[2]: Leaving directory 
> > > `/home/per/software/netcdf-fortran-4.4.0/fortran'
> > > make[1]: Leaving directory 
> > > `/home/per/software/netcdf-fortran-4.4.0/fortran'
> > > Making check in nf_test
> > > make[1]: Entering directory 
> > > `/home/per/software/netcdf-fortran-4.4.0/nf_test'
> > > make  nf_test  ftst_vars ftst_vars2 ftst_vars3 ftst_vars4 ftst_vars5 
> > > ftst_vars6 ftst_types ftst_types2 ftst_types3 ftst_groups ftst_path 
> > > ftst_rengrps f90tst_vars tst_types tst_types2 f90tst_vars_vlen 
> > > tst_f90_nc4 f90tst_grps f90tst_fill f90tst_fill2 f90tst_vars3 
> > > f90tst_vars4 f90tst_vars2 f90tst_path f90tst_rengrps      tst_f90
> > > make[2]: Entering directory 
> > > `/home/per/software/netcdf-fortran-4.4.0/nf_test'
> > > /bin/bash ../libtool  --tag=F77   --mode=link mpif90 -I../fortran   
> > > -I../fortran -g -O2  -L/usr/lib -o nf_test f03lib_f_interfaces.o 
> > > test_get.o test_put.o nf_error.o nf_test.o test_read.o test_write.o 
> > > util.o f03lib.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -ldl
> > > libtool: link: mpif90 -I../fortran -I../fortran -g -O2 -o nf_test 
> > > f03lib_f_interfaces.o test_get.o test_put.o nf_error.o nf_test.o 
> > > test_read.o test_write.o util.o f03lib.o  -L/usr/lib 
> > > ../fortran/.libs/libnetcdff.a -lz -lnetcdf -lhdf5 -ldl
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function 
> > > `read_var':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4file.c:1645: undefined 
> > > reference to `H5DSget_num_scales'
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4file.c:1662: undefined 
> > > reference to `H5DSiterate_scales'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function 
> > > `read_dataset':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4file.c:1843: undefined 
> > > reference to `H5DSis_scale'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function 
> > > `read_scale':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4file.c:568: undefined 
> > > reference to `H5DSget_scale_name'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function 
> > > `write_dim':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4hdf.c:2304: undefined 
> > > reference to `H5DSset_scale'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function 
> > > `rec_reattach_scales':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4hdf.c:66: undefined reference 
> > > to `H5DSattach_scale'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function 
> > > `rec_detach_scales':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4hdf.c:107: undefined reference 
> > > to `H5DSdetach_scale'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function 
> > > `var_create_dataset':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4hdf.c:1526: undefined 
> > > reference to `H5DSset_scale'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function 
> > > `write_var':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4hdf.c:2187: undefined 
> > > reference to `H5DSdetach_scale'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function 
> > > `attach_dimscales':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4hdf.c:2018: undefined 
> > > reference to `H5DSattach_scale'
> > > //usr/local/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o): In function 
> > > `nc4_reform_coord_var':
> > > /home/per/software/netcdf-4.3.2/libsrc4/nc4internal.c:1312: undefined 
> > > reference to `H5DSdetach_scale'
> > > collect2: error: ld returned 1 exit status
> > > make[2]: *** [nf_test] Error 1
> > > make[2]: Leaving directory 
> > > `/home/per/software/netcdf-fortran-4.4.0/nf_test'
> > > make[1]: *** [check-am] Error 2
> > > make[1]: Leaving directory 
> > > `/home/per/software/netcdf-fortran-4.4.0/nf_test'
> > > make: *** [check-recursive] Error 1
> > >
> > >
> > >
> > > ________________________________________
> > > From: Unidata netCDF Support <address@hidden<mailto:address@hidden>>
> > > Sent: 06 August 2014 17:34
> > > To: Jansson Pær
> > > Subject: [netCDF #TRL-392354]: netcdf-4 build fails
> > >
> > > Hello,
> > >
> > > > Hi again!
> > > > I ended up reinstalling Ubuntu, just to make sure everything was fresh, 
> > > > since I tried so many times, often changing something in the 
> > > > environment...
> > > > Then I took a shortcut and did "sudo apt-get install 
> > > > libhdf5-openmpi-7", which seems to work because finally the 
> > > > netcdf-4.3.2 code installed without errors, like this;
> > > >
> > >
> > > I am glad that worked! I have mixed results on Ubuntu when using the 
> > > pre-built hdf5 packages.  Sometimes it works, sometimes it doesn't. So I 
> > > am glad that this worked for you.
> > >
> > > (...)
> > >
> > >
> > > >
> > > > > export CPPFLAGS="-I/usr/include"
> > > > > export LDFLAGS="-L/usr/lib"
> > > > > export LIBS="-lz -ldl -lhdf5"
> > >
> > >
> > > For some reason, it appears that netcdf-fortran is not automatically 
> > > trying to link against libnetcdf.a. You can see this at line 729 in your 
> > > config.log where it is looking for a library with 'nc_open', which we 
> > > would expect to find in libnetcdf.  I would change your `LIBS` line as 
> > > follows:
> > >
> > > export LIBS="-lz -ldl -lhdf5 -lnetcdf"
> > >
> > > And then reconfigure and compile.  I expect that this will solve your 
> > > problem, or at least move us to a new one!  Please let me know if this 
> > > helps .
> > >
> > > -Ward
> > >
> > > > > export CC=mpicc
> > > > > export FC=mpif90
> > > > > ./configure --enable-parallel-tests --disable-shared
> > > > > make check
> > > >
> > > > Which produced an early error;
> > > > Making check in fortran
> > > > make[1]: Entering directory 
> > > > `/home/per/software/netcdf-fortran-4.4.0/fortran'
> > > > mpif90  -g -O2 -c -o netcdf.o  netcdf.f90
> > > > netcdf_overloads.f90:13.52:
> > > > Included at netcdf.f90:48:
> > > >
> > > > nf90_def_var_fill_FourByteReal, &
> > > > 1
> > > > Error: Procedure 'nf90_def_var_fill_eightbytereal' in generic interface 
> > > > 'nf90_def_var_fill' at (1) is neither function nor subroutine
> > > > netcdf_overloads.f90:22.52:
> > > > Included at netcdf.f90:48:
> > > >
> > > > nf90_inq_var_fill_FourByteReal, &
> > > > 1
> > > > Error: Procedure 'nf90_inq_var_fill_eightbytereal' in generic interface 
> > > > 'nf90_inq_var_fill' at (1) is neither function nor subroutine
> > > > netcdf_text_variables.f90:60.93:
> > > > Included at netcdf.f90:56:
> > > >
> > > > numDims  ) = (/ 1, (product(localCount(:counter)), counter = 1, numDims 
> > > > - 1) /)
> > > > 1
> > > > Warning: DO loop at (1) will be executed zero times
> > > > make[1]: *** [netcdf.o] Error 1
> > > > make[1]: Leaving directory 
> > > > `/home/per/software/netcdf-fortran-4.4.0/fortran'
> > > > make: *** [check-recursive] Error 1
> > > > Any ideas what happened this time? (sorry for my incompetence...)
> > > > I searched for netcfd.o but it doesn't exist...
> > > >
> > > > Including my config.log file
> > > >
> > > > Best regards!
> > > > Per
> > > >
> > > >
> > > > ________________________________________
> > > > From: Unidata netCDF Support <address@hidden<mailto:address@hidden>>
> > > > Sent: 05 August 2014 17:59
> > > > To: Jansson Pær
> > > > Subject: [netCDF #TRL-392354]: netcdf-4 build fails
> > > >
> > > > Hi,
> > > >
> > > > Glad to hear you're making some progress; I hope you're able to get the
> > > > hdf5 libraries configured and installed the way you want.  Hopefully 
> > > > that
> > > > will fix netcdf issue!
> > > >
> > > > Have a great day,
> > > >
> > > > -Ward
> > > >
> > > >
> > > > On Tue, Aug 5, 2014 at 1:38 AM, Jansson Pær <address@hidden
> > > <mailto:address@hidden%0b>> > wrote:
> > > >
> > > > > New Client Reply: netcdf-4 build fails
> > > > >
> > > > > Hi!
> > > > > Thanks for your reply.
> > > > > So it seems I made a couple of typo's, which doesn't help. (the extra 
> > > > > "S"
> > > > > (twice) in the LD_LIBARARY_PATH and the missing "-".
> > > > > Furthermore, It seems that hdf5 is NOT built with parallel, even when 
> > > > > I
> > > > > specify it correctly.
> > > > > Next, I will contact the HDF-support to get this right.
> > > > > Thanks for now!
> > > > > /Pär
> > > > >
> > > > > ________________________________________
> > > > > From: Unidata netCDF Support <address@hidden<mailto:address@hidden>>
> > > > > Sent: 04 August 2014 17:51
> > > > > To: Jansson Pær
> > > > > Cc: address@hidden<mailto:address@hidden>
> > > > > Subject: [netCDF #TRL-392354]: netcdf-4 build fails
> > > > >
> > > > > Hello,
> > > > >
> > > > > > Hi!
> > > > > >
> > > > > > Per Jansson, PhD student, physical oceanography at UiT, Norway, 
> > > > > > here.
> > > > > >
> > > > > > (On a brand new workstation with ubuntu 14.04 LTS.)
> > > > > >
> > > > > > I'm trying to build netcdf-4.3.2 C-libraries with support for 
> > > > > > parallel
> > > > > and netcdf-4, but ran into problems;
> > > > > >
> > > > > > I have successfully installed hdf5 (1.8.13) (make check 
> > > > > > install-->ok) .
> > > > > like this;
> > > > > > export LD_LIBRARYS_PATH="/home/per/local/lib /usr/local/lib"
> > > > > > export CPPFLAGS="-I/home/per/local/include"
> > > > >
> > > > > I don't know if it is relevant, but LD_LIBRARYS_PATH should, I 
> > > > > believe, be:
> > > > >
> > > > > LD_LIBRARY_PATH="/home/per/local/lib:/usr/local/lib"
> > > > >
> > > > > I have not seen 'LD_LIBRARYS_PATH' before, and a google search is not
> > > > > showing me any information about it.  Section 3.3.1 of the following
> > > > > document describes how to use LD_LIBRARY_PATH.
> > > > >
> > > > > http://tldp.org/HOWTO/Program-Library-HOWTO/shared-libraries.html
> > > > >
> > > > > > export LDFLAGS="-L/home/per/local/lib"
> > > > > > export LIBS="-lz -ldl"
> > > > > > export CC=mpicc
> > > > > > ./configure --prefix=/home/per/local/ -with-zlib=/home/per/local
> > > > > -enable-parallel
> > > > >
> > > > > Unless this is a typo in the email, I believe you should use
> > > > > '--enable-parallel', with two dashes, not '-enable-parallel', as you 
> > > > > have
> > > > > above.  What is happening is that configure is not finding parallel 
> > > > > symbols
> > > > > in libhdf5, and so 'USE_PARALLEL' is not being defined.  As a result,
> > > > > MPI_Comm is being defined in ncdispatch.h; this is guarded by an 
> > > > > "#ifndef
> > > > > USE_PARALLEL" block.  Looking at the config.log file you provided, it
> > > > > confirms that no parallel symbols are found.
> > > > >
> > > > > Can you confirm that libhdf5 actually built with parallel 
> > > > > functionality?
> > > > >
> > > > > Thanks,
> > > > >
> > > > > -Ward
> > > > >
> > > > > > make check
> > > > > > make install
> > > > > >
> > > > > > Then I try to build the netcdf-4.3.2 C-libraries like this;
> > > > > > export LD_LIBRARYS_PATH="/home/per/local/lib /usr/local/lib"
> > > > >
> > > > > Again, I'm not sure if it is relevant, but this should be changed as
> > > > > described above.
> > > > >
> > > > > > export CPPFLAGS="-I/home/per/local/include"
> > > > > > export LDFLAGS="-L/home/per/local/lib"
> > > > > > export LIBS="-lz -ldl"
> > > > > > export CC=mpicc
> > > > > > ./configure --prefix=/home/per/local --enable-netcdf-4
> > > > > --enable-parallel-tests --disable-shared --disable-dap
> > > > >
> > > > >
> > > > > > so far ok
> > > > > > make check
> > > > > > produces; (this is end-bit of the output...)
> > > > > >
> > > > > ============================================================================
> > > > > > Testsuite summary for netCDF 4.3.2
> > > > > >
> > > > > ============================================================================
> > > > > > # TOTAL: 26
> > > > > > # PASS:  26
> > > > > > # SKIP:  0
> > > > > > # XFAIL: 0
> > > > > > # FAIL:  0
> > > > > > # XPASS: 0
> > > > > > # ERROR: 0
> > > > > >
> > > > > ============================================================================
> > > > > > make[3]: Leaving directory `/home/per/software/netcdf-4.3.2/h5_test'
> > > > > > make[2]: Leaving directory `/home/per/software/netcdf-4.3.2/h5_test'
> > > > > > make[1]: Leaving directory `/home/per/software/netcdf-4.3.2/h5_test'
> > > > > > Making check in libdispatch
> > > > > > make[1]: Entering directory 
> > > > > > `/home/per/software/netcdf-4.3.2/libdispatch'
> > > > > > make[1]: Nothing to be done for `check'.
> > > > > > make[1]: Leaving directory 
> > > > > > `/home/per/software/netcdf-4.3.2/libdispatch'
> > > > > > Making check in libsrc
> > > > > > make[1]: Entering directory `/home/per/software/netcdf-4.3.2/libsrc'
> > > > > > make[1]: Nothing to be done for `check'.
> > > > > > make[1]: Leaving directory `/home/per/software/netcdf-4.3.2/libsrc'
> > > > > > Making check in libsrc4
> > > > > > make[1]: Entering directory 
> > > > > > `/home/per/software/netcdf-4.3.2/libsrc4'
> > > > > > /bin/bash ../libtool  --tag=CC   --mode=compile mpicc 
> > > > > > -DHAVE_CONFIG_H
> > > > > -I. -I..  -I../include    -I/home/per/local/include  -g -O2 -MT
> > > > > libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo 
> > > > > -c -o
> > > > > libnetcdf4_la-nc4attr.lo `test -f 'nc4attr.c' || echo './'`nc4attr.c
> > > > > > libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I.. -I../include
> > > > > -I/home/per/local/include -g -O2 -MT libnetcdf4_la-nc4attr.lo -MD -MP 
> > > > > -MF
> > > > > .deps/libnetcdf4_la-nc4attr.Tpo -c nc4attr.c -o 
> > > > > libnetcdf4_la-nc4attr.o
> > > > > > In file included from nc4dispatch.h:15:0,
> > > > > > from nc4attr.c:17:
> > > > > > ../include/ncdispatch.h:90:13: error: conflicting types for 
> > > > > > 'MPI_Comm'
> > > > > > typedef int MPI_Comm;
> > > > > > ^
> > > > > > In file included from /home/per/local/include/H5public.h:61:0,
> > > > > > from /home/per/local/include/hdf5.h:24,
> > > > > > from ../include/nc4internal.h:18,
> > > > > > from nc4attr.c:15:
> > > > > > /home/per/local/include/mpi.h:324:37: note: previous declaration of
> > > > > 'MPI_Comm' was here
> > > > > > typedef struct ompi_communicator_t *MPI_Comm;
> > > > > > ^
> > > > > > In file included from nc4dispatch.h:15:0,
> > > > > > from nc4attr.c:17:
> > > > > > ../include/ncdispatch.h:91:13: error: conflicting types for 
> > > > > > 'MPI_Info'
> > > > > > typedef int MPI_Info;
> > > > > > ^
> > > > > > In file included from /home/per/local/include/H5public.h:61:0,
> > > > > > from /home/per/local/include/hdf5.h:24,
> > > > > > from ../include/nc4internal.h:18,
> > > > > > from nc4attr.c:15:
> > > > > > /home/per/local/include/mpi.h:331:29: note: previous declaration of
> > > > > 'MPI_Info' was here
> > > > > > typedef struct ompi_info_t *MPI_Info;
> > > > > > ^
> > > > > > In file included from nc4dispatch.h:15:0,
> > > > > > from nc4attr.c:17:
> > > > > > ../include/ncdispatch.h:92:0: warning: "MPI_COMM_WORLD" redefined
> > > > > [enabled by default]
> > > > > > #define MPI_COMM_WORLD 0
> > > > > > ^
> > > > > > In file included from /home/per/local/include/H5public.h:61:0,
> > > > > > from /home/per/local/include/hdf5.h:24,
> > > > > > from ../include/nc4internal.h:18,
> > > > > > from nc4attr.c:15:
> > > > > > /home/per/local/include/mpi.h:1016:0: note: this is the location of 
> > > > > > the
> > > > > previous definition
> > > > > > #define MPI_COMM_WORLD OMPI_PREDEFINED_GLOBAL( MPI_Comm,
> > > > > ompi_mpi_comm_world)
> > > > > > ^
> > > > > > In file included from nc4dispatch.h:15:0,
> > > > > > from nc4attr.c:17:
> > > > > > ../include/ncdispatch.h:93:0: warning: "MPI_INFO_NULL" redefined
> > > > > [enabled by default]
> > > > > > #define MPI_INFO_NULL 0
> > > > > > ^
> > > > > > In file included from /home/per/local/include/H5public.h:61:0,
> > > > > > from /home/per/local/include/hdf5.h:24,
> > > > > > from ../include/nc4internal.h:18,
> > > > > > from nc4attr.c:15:
> > > > > > /home/per/local/include/mpi.h:743:0: note: this is the location of 
> > > > > > the
> > > > > previous definition
> > > > > > #define MPI_INFO_NULL OMPI_PREDEFINED_GLOBAL(MPI_Info,
> > > > > ompi_mpi_info_null)
> > > > > > ^
> > > > > > make[1]: *** [libnetcdf4_la-nc4attr.lo] Error 1
> > > > > > make[1]: Leaving directory `/home/per/software/netcdf-4.3.2/libsrc4'
> > > > > > make: *** [check-recursive] Error 1
> > > > > > per@per-HP-Z620-Workstation:~/software/netcdf-4.3.2$<mailto:per@per-HP-Z620-Workstation:~/software/netcdf-4.3.2$>
> > > > > >
> > > > > > What is happening? If it's any help, I have attached the config.log
> > > > > file...
> > > > > > I need the netcdf-4 to be able to install netcdf-fortran-4.4.0, 
> > > > > > which I
> > > > > need to install ROMS (regional Ocean Model System).
> > > > > >
> > > > > >
> > > > > > Best regards!
> > > > > > Per
> > > > > >
> > > > > >
> > > > >
> > > > > Ticket Details
> > > > > ===================
> > > > > Ticket ID: TRL-392354
> > > > > Department: Support netCDF
> > > > > Priority: Normal
> > > > > Status: Closed
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > Ticket Details
> > > > > ===================
> > > > > Ticket ID: TRL-392354
> > > > > Department: Support netCDF
> > > > > Priority: Normal
> > > > > Status: Open
> > > > > Link:
> > > > > https://www.unidata.ucar.edu/esupport/staff/index.php?_m=tickets&_a=viewticket&ticketid=24256
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > > > Ticket Details
> > > > ===================
> > > > Ticket ID: TRL-392354
> > > > Department: Support netCDF
> > > > Priority: Normal
> > > > Status: Open
> > > >
> > > >
> > > >
> > >
> > >
> > > Ticket Details
> > > ===================
> > > Ticket ID: TRL-392354
> > > Department: Support netCDF
> > > Priority: Normal
> > > Status: Closed
> > >
> > >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: TRL-392354
> > Department: Support netCDF
> > Priority: Urgent
> > Status: Closed
> >
> >
> >
> Russ Rew                                         UCAR Unidata Program
> address@hidden                      
> http://www.unidata.ucar.edu<http://www.unidata.ucar.edu/>
> 
> 
> 
> Ticket Details
> ===================
> Ticket ID: TRL-392354
> Department: Support netCDF
> Priority: Urgent
> Status: Closed
> 
> 
> 
Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: TRL-392354
Department: Support netCDF
Priority: Urgent
Status: Closed