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[netCDF #QBX-695002]: netcdf-fortran 4.4.1 check fails in Mac OS X 10.9.5 with gfortran

Li,

> Thank you for help! The following is the configure command line:
> 
> . /opt/packman/zlib/1.2.8/1/bashrc && . /opt/packman/curl/7.37.1/1/bashrc && 
> . /opt/packman/szip/2.1/1/bashrc && . /opt/packman/mpich/3.1.2/1/bashrc && . 
> /opt/packman/hdf5/1.8.13/1/bashrc && . 
> /opt/packman/parallel_netcdf/1.5.0/1/bashrc && . 
> /opt/packman/netcdf_c/4.3.2/1/bashrc && . /opt/packman/gcc/4.9.1/bashrc && 
> LD_RUN_PATH='/opt/packman/zlib/1.2.8/1/lib:/opt/packman/curl/7.37.1/1/lib:/opt/packman/szip/2.1/1/lib:/opt/packman/mpich/3.1.2/1/lib:/opt/packman/hdf5/1.8.13/1/lib:/opt/packman/parallel_netcdf/1.5.0/1/lib:/opt/packman/netcdf_c/4.3.2/1/lib:/opt/packman/gcc/4.9.1/lib'
>  CC=/opt/packman/mpich/3.1.2/1/bin/mpicc 
> MPICC=/opt/packman/mpich/3.1.2/1/bin/mpicc 
> CXX=/opt/packman/mpich/3.1.2/1/bin/mpic++ 
> MPICXX=/opt/packman/mpich/3.1.2/1/bin/mpic++ 
> F77=/opt/packman/mpich/3.1.2/1/bin/mpif77 
> MPIF77=/opt/packman/mpich/3.1.2/1/bin/mpif77 
> FC=/opt/packman/mpich/3.1.2/1/bin/mpif90 
> MPIF90=/opt/packman/mpich/3.1.2/1/bin/mpif90 
> PATH=/opt/packman/netcdf_c/4.3.2/1/bin:$PATH CPPFLAGS='-I/opt
 /packman/netcdf_c/4.3.2/1/include' 
LDFLAGS='-L/opt/packman/netcdf_c/4.3.2/1/lib’ ./configure 
--prefix=/opt/packman/netcdf_fortran/4.4.1/1 --disable-dependency-tracking 
--disable-dap-remote-tests --enable-static --enable-shared 
--enable-parallel-tests
> 
> So the shared and static libraries are both built. The config.log and build 
> out are attached.

Unfortunately, I didn't see any attachments on your email.  Please send the 
config.log and 
output from again, if you can.  Thanks.

--Russ

> I have saw the instructions. To my understanding, if the static libraries are 
> built, we also need to specify the locations of HDF5, ZLIB and CURL. I only 
> specify the location of NetCDF-Fortran, but why the building is ok in CentOS? 
> After I specify them, NetCDF-Fortran with parallel option enabled is built 
> successfully in Mac.
> 
> Best regards,
> 
> Li
> 
> 
> On 2014?9?29?, at ??3:51, Unidata netCDF Support <address@hidden> wrote:
> 
> > Hi Li,
> >
> > I'm not sure whether you're trying to build shared or static libraries, but 
> > the
> > instructions are different in the two cases.  In any case, the instructions 
> > are
> > here for both kinds of libraries:
> >
> >   
> > http://www.unidata.ucar.edu/netcdf/docs/building_netcdf_fortran.html#building_fortran_shared_libraries
> >
> > For OSX, be sure to use DYLD_LIBRARY_PATH instead of LD_LIBRARY_PATH to
> > indicate where the C library is installed.  Please let us know if following 
> > the
> > instructions above doesn't work.  It works for us on OSX.
> >
> > --Russ
> >
> >> I am developing a package manager (https://github.com/dongli/packman),
> >> which will install packages (i.e. netcdf) by just one command. It should
> >> support multiple Linux distributions and Mac OS X. Currently, I am
> >> testing netcdf-fortran with parallel option enabled. The compiler set is
> >> from GCC 4.9.1.
> >>
> >> The hdf5, netcdf-c and mpich (or openmpi) have been installed correctly
> >> on CentOS and Mac OS X. Then I tried to build netcdf-fortran 4.4.1, the
> >> one on CentOS was built successfully, but the one on Mac OS X failed
> >> with the following errors when checking:
> >>
> >> libtool: link: /opt/packman/mpich/3.1.2/1/bin/mpif77 -I../fortran 
> >> -I../fortran -g -O2 -o .libs/nf_test f03lib_f_interfaces.o test_get.o 
> >> test_put.o nf_error.o nf_test.o test_read.o test_write.o util.o f03lib.o 
> >> -L/opt/packman/netcdf_c/4.3.2/1/lib ../fortran/.libs/libnetcdff.dylib 
> >> Undefined symbols for architecture x86_64:
> >> "_nc__create", referenced from:
> >> import-atom in libnetcdff.dylib
> >> "_nc__create_mp", referenced from:
> >> import-atom in libnetcdff.dylib
> >> "_nc__enddef", referenced from:
> >> import-atom in libnetcdff.dylib
> >> …
> >>
> >> I have checked the same compile command on CentOS:
> >>
> >> libtool: link: /home/dongli/tools/mpich/3.1.2/1/bin/mpif77 -I../fortran 
> >> -I../fortran -g -O2 -o .libs/nf_test f03lib_f_interfaces.o test_get.o 
> >> test_put.o nf_error.o nf_test.o test_read.o test_write.o util.o f03lib.o 
> >> -L/home/dongli/tools/netcdf_c/4.3.2/1/lib ../fortran/.libs/libnetcdff.so 
> >> -L/home/dongli/tools/curl/7.37.1/1/lib 
> >> -L/home/dongli/tools/zlib/1.2.8/1/lib -L/home/dongli/tools/szip/2.1/1/lib 
> >> -L/home/dongli/tools/hdf5/1.8.13/1/lib 
> >> -L/home/dongli/tools/parallel_netcdf/1.5.0/1/lib 
> >> /home/dongli/tools/netcdf_c/4.3.2/1/lib/libnetcdf.so -lpnetcdf 
> >> /home/dongli/tools/hdf5/1.8.13/1/lib/libhdf5_hl.so 
> >> /home/dongli/tools/hdf5/1.8.13/1/lib/libhdf5.so 
> >> /home/dongli/tools/szip/2.1/1/lib/libsz.so -ldl -lm 
> >> /home/dongli/tools/curl/7.37.1/1/lib/libcurl.so -lidn -lssl -lcrypto 
> >> -lldap -lz -lrt -Wl,-rpath 
> >> -Wl,/home/dongli/tools/netcdf_fortran/4.4.1/1/lib -Wl,-rpath 
> >> -Wl,/home/dongli/tools/netcdf_c/4.3.2/1/lib -Wl,-rpath 
> >> -Wl,/home/dongli/tools/hdf5/1.8.13/1/lib -Wl,-rpath -Wl,/home/dongli/t
 ool
> > s/
> >> szip/2.1/1/lib -Wl,-rpath -Wl,/home/dongli/tools/curl/7.37.1/1/lib
> >>
> >> As you can see, on CentOS more options have been appended, so the '_nc_*'
> >> symbols have been resolved.
> >>
> >> So I would like to know what are the differences of building procedures
> >> on the two systems, and how could I solve this problem on Mac OS X?
> >>
> >> Best regards,
> >>
> >> Li
> >>
> >> -----------------------------------------
> >> Dr. Li Dong (??)
> >> LASG, Institute of Atmospheric Physics
> >> Chinese Academy of Sciences
> >> P.O. Box 9804
> >> Beijing 100029, China
> >> Phone: 8610-8299 5143
> >> Website: http://dongli.github.io/dongli
> >>
> >>
> >>
> > Russ Rew                                         UCAR Unidata Program
> > address@hidden                      http://www.unidata.ucar.edu
> >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: QBX-695002
> > Department: Support netCDF
> > Priority: Normal
> > Status: Closed
> >
> 
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: QBX-695002
Department: Support netCDF
Priority: Normal
Status: Closed