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[netCDF #PGT-746617]: make check error

Hi Konstantinos,

I'll jump in here, since I've seen that error before.

The libimf library is not related to netCDF.  It just provides runtime
support needed by the Intel compilers.  It may be that you need to set
a LD_LIBRARY_PATH environment variable to tell ld where to find these
Intel libraries, or that may be done by shell scripts you have to run
to configure the environment when using the Intel compilers.  For
example, see this previous response to a similar user support
question:

  http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg10723.html

There may also be some help in this Intel guide for using their compilers
to build netCDF libraries:

  
http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-netcdf-with-the-intel-compilers

--Russ

> i did what you said so I:
> 
> LD_LIBRARY_PATH=/usr/local_64/lib make check
> 
> but then I get:
> 
> ./tst_h_dimscales3: error while loading shared libraries: libimf.so: cannot 
> open shared object file: No such file or directory
> FAIL: tst_h_dimscales3
> ./tst_h_enums: error while loading shared libraries: libimf.so: cannot open 
> shared object file: No such file or directory
> FAIL: tst_h_enums
> ./tst_h_dimscales4: error while loading shared libraries: libimf.so: cannot 
> open shared object file: No such file or directory
> FAIL: tst_h_dimscales4
> ================================================
> 26 of 26 tests failed
> Please report to address@hidden
> ================================================
> make[2]: *** [check-TESTS] Error 1
> make[2]: Leaving directory 
> `/lustre/jhome13/jicg21/jicg2115/bin/cdo-install/netcdf/netcdf-4.2.1.1/h5_test'
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory 
> `/lustre/jhome13/jicg21/jicg2115/bin/cdo-install/netcdf/netcdf-4.2.1.1/h5_test'
> make: *** [check-recursive] Error 1
> 
> while:
> 
> jicg2115@jj28g03:~/bin/cdo-install/netcdf/netcdf-4.2.1.1> ls /usr/local_64/lib
> *                        libamd.a       libgli.a          libnco-4.2.0.so  
> libsasl2.so.2          libsz.so.2.0.0  pkgconfig
> X11                      libamdf77.a    libgrace_np.a     libnco-4.3.0.so  
> libsuperlu.a           libumfpack.a
> away.libtorque.a         libarpack.a    liblber-2.3.so.0  libnco-4.4.4.so  
> libsuperlu_dist_2.3.a  libumfpack.def
> away.libtorque.la        libexpat.so.0  libldap-2.3.so.0  libnco.a         
> libsz.a                libz.a
> away.libtorque.so        libexpat.so.1  libldap.so.199    libnco.la        
> libsz.la               libz.so
> away.libtorque.so.2      libgks.a       libldapcpp.so.0   libnco.so        
> libsz.so               libz.so.1
> away.libtorque.so.2.0.0  libgks.so      libnagfl90.a      libparpack.a     
> libsz.so.2             libz.so.1.2.8
> 
> Now what should I do?
> Thank you very much for your response.
> Best regards
> 
> Konstantinos
> 
> ________________________________________
> From: Unidata netCDF Support [address@hidden]
> Sent: Monday, October 13, 2014 6:17 PM
> To: Kazanas, Konstantinos
> Cc: address@hidden
> Subject: [netCDF #PGT-746617]: make check error
> 
> Hello,
> 
> I apologize for the delayed response to your question.  It appears that libsz 
> is not on your LD_LIBRARY_PATH at runtime, but is required by libhdf5.  To 
> get around this, you will need to modify your LD_LIBRARY_PATH.  For example, 
> if libsz was located in '/usr/local/lib', you would run 'make check' as 
> follows:
> 
> $ LD_LIBRARY_PATH=/usr/local/lib make check
> 
> Please let me know if this does not resolve your issue, thanks!
> 
> -Ward
> 
> > Dear support,
> >
> > trying to install netcdf and when i "make check" I receive the following:
> >
> >
> > FAIL: tst_h_dimscales1
> >
> > ./tst_h_dimscales2: error while loading shared libraries: libsz.so.2: 
> > cannot open shared object file: No such file or directory
> >
> > FAIL: tst_h_dimscales2
> >
> > ./tst_h_dimscales3: error while loading shared libraries: libsz.so.2: 
> > cannot open shared object file: No such file or directory
> >
> > FAIL: tst_h_dimscales3
> >
> > ./tst_h_enums: error while loading shared libraries: libsz.so.2: cannot 
> > open shared object file: No such file or directory
> >
> > FAIL: tst_h_enums
> >
> > ./tst_h_dimscales4: error while loading shared libraries: libsz.so.2: 
> > cannot open shared object file: No such file or directory
> >
> > FAIL: tst_h_dimscales4
> >
> > ================================================
> >
> > 26 of 26 tests failed
> >
> > Please report to address@hidden
> >
> > ================================================
> >
> > make[2]: *** [check-TESTS] Error 1
> >
> > make[2]: Leaving directory 
> > `/lustre/jhome13/jicg21/jicg2115/bin/cdo-install/netcdf/netcdf-4.2.1.1/h5_test'
> >
> > make[1]: *** [check-am] Error 2
> >
> > make[1]: Leaving directory 
> > `/lustre/jhome13/jicg21/jicg2115/bin/cdo-install/netcdf/netcdf-4.2.1.1/h5_test'
> >
> > make: *** [check-recursive] Error 1
> >
> >
> > Could you be so kind and tell me what should i do to continue the 
> > installation?
> >
> > Thanx in advance
> >
> > Konstantinos Kazanas
> >
> >
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> 
> 
> Ticket Details
> ===================
> Ticket ID: PGT-746617
> Department: Support netCDF
> Priority: Normal
> Status: Closed
> 
> 
> 
Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: PGT-746617
Department: Support netCDF
Priority: Normal
Status: Closed