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[netCDF #HSS-201489]: NetCDF (C) 4.4.0 failures in "make check"



Hello Carl,

We do not currently support HDF5 1.10.0; the test failures you are seeing are 
the result (largely) of deprecated HDF5 functions being removed, I've been 
told.  This will be corrected.  However, the larger issue is this:  netCDF 
files created with netCDF 4.4.0 (or earlier) and HDF5 1.10.0 will *not* be 
readable by systems using netCDF 4.4.0 and HDF5 1.8.16 or earlier.  The 
underlying file is simply not backwards compatible.  We have released the first 
release candidate for netCDF 4.4.1, which corrects this (although the test 
failures remain).  These failures will be corrected in the next release 
candidate.

I hope this helps,

-Ward

> *On 03/17/2016 05:37 PM, Carl Ponder wrote:*
> > I'm using the PGI 16.3 compiler to build NetCDF-C version 4.4.0.
> > When I run the "make -i -k check" I see these issues
> >
> >     FAIL: nc_test
> >     FAIL: tst_atts3
> >
> I'm building NetCDF (C) 4.4.0 on out CentOS 7.2 system, and seeing these
> failures in the "make check":
> 
> FAIL: tst_files
> FAIL: run_par_test.sh
> See nc_test4/test-suite.log
> Please report to address@hidden
> 
> FAIL: nc_test
> FAIL: tst_atts3
> See nc_test/test-suite.log
> Please report to address@hidden
> 
> FAIL: tst_h_dimscales
> 
> Thenc_test &tst_atts3 issues I've reported before..
> Here are the details from the log files.
> The tst_h_dimscale only failed with PGI 16.4 and I'm wondering if it
> could be an issue with my HDF5 (1.10.0) build.
> All the other cases also failed with the GCC 4.8.5 & Intel 15.0
> compilers; I'm wondering if they could be issues with my OpenMPI builds
> or the system I'm running on.
> 
> ------------------------------------------------------------------------
> 
> *** testing multiple open files...Sorry! Unexpected result, tst_files.c,
> line: 347
> *FAIL tst_files (exit status: 2)*
> 
> ------------------------------------------------------------------------
> 
> *** Testing parallel IO for raw-data with MPI-IO
> (driver)...[ivb109:37126] *** Process received signal ***
> [ivb109:37106] *** Process received signal ***
> [ivb109:37106] Signal: Segmentation fault (11)
> [ivb109:37106] Signal code: Address not mapped (1)
> [ivb109:37106] Failing at address: (nil)
> .....
> --------------------------------------------------------------------------
> mpiexec noticed that process rank 14 with PID 37211 on node ivb109
> exited on signal 11 (Segmentation fault).
> --------------------------------------------------------------------------
> *FAIL run_par_test.sh (exit status: 139)*
> 
> ------------------------------------------------------------------------
> 
> HDF5-DIAG: Error detected in HDF5 (1.10.0) thread 0:
> #000: H5Gdeprec.c line 1092 in H5Gget_objtype_by_idx(): can't get
> object type
> major: Symbol table
> minor: Inappropriate type
> #001: H5Gdeprec.c line 1144 in H5G_obj_get_type_by_idx(): can't
> locate type
> major: Symbol table
> minor: Object not found
> #002: H5Gstab.c line 1219 in H5G__stab_get_type_by_idx(): index out
> of bound
> major: Invalid arguments to routine
> minor: Inappropriate type
> 
> *** Checking HDF5 dimension scales.
> *** Creating simple dimension scales file...ok.
> *** Checking that simple dimscale file can be read...ok.
> *** Creating simple dimension scales file with lots of datasets...ok.
> *** Creating a file with an unlimited dimension scale...ok.
> *** Checking that unlimited dimscale file can be read...ok.
> *** Creating some 3D datasets using shared dimscales...ok.
> *** Checking 3D datasets created with shared dimscales...ok.
> *** Creating 3D datasets using shared dimscales in groups...ok.
> *** Checking 3D datasets in groups created with shared
> dimscales...Sorry! Unexpected result, tst_h_dimscales.c, line: 57
> Sorry! Unexpected result, tst_h_dimscales.c, line: 67
> Sorry! Unexpected result, tst_h_dimscales.c, line: 775
> *FAIL tst_h_dimscales (exit status: 2)*
> 
> 
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Ticket Details
===================
Ticket ID: HSS-201489
Department: Support netCDF
Priority: Normal
Status: Closed