gdradr, gddiag, nex2gini . . . and possibly others have issues with
64bit byte sizes.
You have two options that seem to work . . . mostly.
1) use 32-bit compile GEMPAK executables. If you use one of the many
RHEL variants (Fedora, RHEL, CentOS) - you will need to install
libgfortran for the 32-bit compiled executables to work on a 64bit machine.
2) don't use any of the non-GEMPAK libs packaged with GEMPAK, but
rather, edit the make config files so that none of the external libs are
used from the GEMPAK source, but are used from your OS.
On 06/29/2010 08:36 PM, Andrew Little wrote:
> I also get something similar while running nex2gini for creating a US Radar
> Composite.
>
> *** glibc detected *** /usr/nawips/GEMPAK/os/linux64/bin/nex2gini:
> munmap_chunk(): invalid pointer: 0x000000000fa649f0 ***
> ======= Backtrace: =========
> /lib64/libc.so.6(cfree+0x166)[0x3c75072856]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x47e6f9]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x474f44]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x473a67]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x46945b]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x442905]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x40ca5d]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x4040d8]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x4f834e]
> /lib64/libc.so.6(__libc_start_main+0xf4)[0x3c7501d994]
> /usr/nawips/GEMPAK/os/linux64/bin/nex2gini[0x402fc9]
> ======= Memory map: ========
> 00400000-0051c000 r-xp 00000000 68:03 16091304
> /usr/nawips/GEMPAK5.11.1/os/linux64/bin/nex2gini
> 0071c000-00732000 rw-p 0011c000 68:03 16091304
> /usr/nawips/GEMPAK5.11.1/os/linux64/bin/nex2gini
> 00732000-05abf000 rw-p 00732000 00:00 0
> 0f9c1000-0fbbe000 rw-p 0f9c1000 00:00 0
> [heap]
> 3c74c00000-3c74c1c000 r-xp 00000000 68:03 6848514
> /lib64/ld-2.5.so
> 3c74e1b000-3c74e1c000 r--p 0001b000 68:03 6848514
> /lib64/ld-2.5.so
> 3c74e1c000-3c74e1d000 rw-p 0001c000 68:03 6848514
> /lib64/ld-2.5.so
> 3c75000000-3c7514d000 r-xp 00000000 68:03 6848517
> /lib64/libc-2.5.so
> 3c7514d000-3c7534d000 ---p 0014d000 68:03 6848517
> /lib64/libc-2.5.so
> 3c7534d000-3c75351000 r--p 0014d000 68:03 6848517
> /lib64/libc-2.5.so
> 3c75351000-3c75352000 rw-p 00151000 68:03 6848517
> /lib64/libc-2.5.so
> 3c75352000-3c75357000 rw-p 3c75352000 00:00 0
> 3c75c00000-3c75c82000 r-xp 00000000 68:03 6848538
> /lib64/libm-2.5.so
> 3c75c82000-3c75e81000 ---p 00082000 68:03 6848538
> /lib64/libm-2.5.so
> 3c75e81000-3c75e82000 r--p 00081000 68:03 6848538
> /lib64/libm-2.5.so
> 3c75e82000-3c75e83000 rw-p 00082000 68:03 6848538
> /lib64/libm-2.5.so
> 3c88200000-3c8820d000 r-xp 00000000 68:03 6848563
> /lib64/libgcc_s-4.1.2-20080825.so.1
> 3c8820d000-3c8840d000 ---p 0000d000 68:03 6848563
> /lib64/libgcc_s-4.1.2-20080825.so.1
> 3c8840d000-3c8840e000 rw-p 0000d000 68:03 6848563
> /lib64/libgcc_s-4.1.2-20080825.so.1
> 2b9338d53000-2b9338d54000 rw-p 2b9338d53000 00:00 0
> 2b9338d6a000-2b9338d6b000 rw-p 2b9338d6a000 00:00 0
> 2b9338d6b000-2b9338e01000 r-xp 00000000 68:03 12108657
> /usr/lib64/libgfortran.so.1.0.0
> 2b9338e01000-2b9339000000 ---p 00096000 68:03 12108657
> /usr/lib64/libgfortran.so.1.0.0
> 2b9339000000-2b9339002000 rw-p 00095000 68:03 12108657
> /usr/lib64/libgfortran.so.1.0.0
> 2b9339002000-2b9339038000 rw-p 2b9339002000 00:00 0
> 7fff922dd000-7fff922f2000 rw-p 7ffffffea000 00:00 0
> [stack]
> ffffffffff600000-ffffffffffe00000 ---p 00000000 00:00 0
> [vdso]
> Abort
> Done with nex2gini
>
> **Does anyone have any suggestions on why a segmentation fault would also be
> occurring?
>
> Thanks.
>
> Andrew Little
> Systems Analyst
>
> Universal Weather & Aviation
> 8787 Tallyho Road
> Houston, Texas 77061
> alittle@xxxxxxxxxxxx
>
> Office: 713.947.5633
> Cell: 713.504.2719
>
>
> -----Original Message-----
> From: gembud-bounces@xxxxxxxxxxxxxxxx
> [mailto:gembud-bounces@xxxxxxxxxxxxxxxx] On Behalf Of Jeff Lake - Admin
> Sent: Tuesday, June 29, 2010 3:33 PM
> To: gembud@xxxxxxxxxxxxxxxx
> Subject: [gembud] UH oh
>
> noticed my gdradr died ..
> went to investigate ...
> this is what I get at the end of running the N0Q for a US composite
>
> Im assuming gcc and or fortran is corrupted ??
> -Jeff
>
>
> *** glibc detected *** gdradr: munmap_chunk(): invalid pointer:
> 0x0000000012a4b7e0 *** ======= Backtrace: =========
> /lib64/libc.so.6(cfree+0x166)[0x3f94072886]
> gdradr[0x48842d]
> gdradr[0x47ec78]
> gdradr[0x47d79b]
> gdradr[0x47318f]
> gdradr[0x44c639]
> gdradr[0x411d55]
> gdradr[0x404443]
> gdradr[0x4f45ae]
> /lib64/libc.so.6(__libc_start_main+0xf4)[0x3f9401d994]
> gdradr[0x403059]
> ======= Memory map: ========
> 00400000-00516000 r-xp 00000000 09:02 16680840
> /usr/local/lib/gempak/GEMPAK5.11.4/os/linux64/bin/gdradr
> 00716000-0072d000 rw-p 00116000 09:02 16680840
> /usr/local/lib/gempak/GEMPAK5.11.4/os/linux64/bin/gdradr
> 0072d000-023cb000 rw-p 0072d000 00:00 0
> 129a2000-12ba5000 rw-p 129a2000 00:00 0
> [heap]
> 3f93c00000-3f93c1c000 r-xp 00000000 09:02 59736376
> /lib64/ld-2.5.so
> 3f93e1b000-3f93e1c000 r--p 0001b000 09:02 59736376
> /lib64/ld-2.5.so
> 3f93e1c000-3f93e1d000 rw-p 0001c000 09:02 59736376
> /lib64/ld-2.5.so
> 3f94000000-3f9414e000 r-xp 00000000 09:02 59736377
> /lib64/libc-2.5.so
> 3f9414e000-3f9434d000 ---p 0014e000 09:02 59736377
> /lib64/libc-2.5.so
> 3f9434d000-3f94351000 r--p 0014d000 09:02 59736377
> /lib64/libc-2.5.so
> 3f94351000-3f94352000 rw-p 00151000 09:02 59736377
> /lib64/libc-2.5.so
> 3f94352000-3f94357000 rw-p 3f94352000 00:00 0
> 3f94800000-3f94882000 r-xp 00000000 09:02 59736381
> /lib64/libm-2.5.so
> 3f94882000-3f94a81000 ---p 00082000 09:02 59736381
> /lib64/libm-2.5.so
> 3f94a81000-3f94a82000 r--p 00081000 09:02 59736381
> /lib64/libm-2.5.so
> 3f94a82000-3f94a83000 rw-p 00082000 09:02 59736381
> /lib64/libm-2.5.so
> 2b4a760c1000-2b4a760c2000 rw-p 2b4a760c1000 00:00 0
> 2b4a760d0000-2b4a760d1000 rw-p 2b4a760d0000 00:00 0
> 2b4a760d1000-2b4a76167000 r-xp 00000000 09:02 16193182
> /usr/lib64/libgfortran.so.1.0.0
> 2b4a76167000-2b4a76366000 ---p 00096000 09:02 16193182
> /usr/lib64/libgfortran.so.1.0.0
> 2b4a76366000-2b4a76368000 rw-p 00095000 09:02 16193182
> /usr/lib64/libgfortran.so.1.0.0
> 2b4a76368000-2b4a76375000 r-xp 00000000 09:02 59736087
> /lib64/libgcc_s-4.1.2-20080825.so.1
> 2b4a76375000-2b4a76575000 ---p 0000d000 09:02 59736087
> /lib64/libgcc_s-4.1.2-20080825.so.1
> 2b4a76575000-2b4a76576000 rw-p 0000d000 09:02 59736087
> /lib64/libgcc_s-4.1.2-20080825.so.1
> 2b4a76576000-2b4a76ed5000 rw-p 2b4a76576000 00:00 0
> 7fffd3dbf000-7fffd3dd5000 rw-p 7ffffffe9000 00:00 0
> [stack]
> ffffffffff600000-ffffffffffe00000 ---p 00000000 00:00 0
> [vdso]
> ./arrg.sh: line 28: 22161 Aborted gdradr <<EOF
>
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