NOTE: The netcdf-hdf mailing list is no longer active. The list archives are made available for historical reasons.
Hi Ed
which system and hdf5 version are you using ?
I briefly tried your sample file using the current 1.7 cvs version and the
output differs from the one
you sent
HDF5 "tst_h_vl2.h5" {
GROUP "/" {
GROUP "grp1" {
DATASET "sea_sounding_dataset" {
DATATYPE "/grp1/sea_sounding_type"
DATASPACE SIMPLE { ( 3 ) / ( 3 ) }
DATA {
(0): {
-858993460,
(23.5)
},
(1): {
-858993460,
(23.5, 22.5)
},
(2): {
-858993460,
(23.5, 22.5, 21.5)
}
}
}
DATATYPE "sea_sounding_type" H5T_COMPOUND {
H5T_STD_I32LE "sounding_no";
H5T_VLEN { H5T_IEEE_F32LE} "temp_vl";
}
}
}
}
At 01:35 PM 9/6/2005, you wrote:
>Howdy HDF5 folk!
>
>Using a recent version of HDF5 from cvs, I encountered the following
>output from h5dump:
>
>HDF5 "tst_h_vl.h5" {
>GROUP "/" {
> GROUP "grp1" {
> DATASET "sea_sounding_dataset" {
> DATATYPE "/grp1/sea_sounding_type"
> DATASPACE SIMPLE { ( 3 ) / ( 3 ) }
> DATA {
> h5dump error: unable to print data
> }
> }
> DATATYPE "sea_sounding_type" H5T_COMPOUND {
> H5T_STD_I32LE "sounding_no";
> H5T_VLEN { H5T_IEEE_F32LE} "temp_vl";
> }
> }
>}
>}
>
>The program that produces the file is here (note that it is the second
>file produced which created the file that h5dump can't handle:
>
>/* This is part of the netCDF package. Copyright 2005 University
> Corporation for Atmospheric Research/Unidata See COPYRIGHT file for
> conditions of use.
>
> This program excersizes HDF5 variable length array code.
>
> $Id: tst_h_vl.c,v 1.3 2005/08/11 15:39:57 ed Exp $
>*/
>#include "tests.h"
>
>#define FILE_NAME "tst_h_vl.h5"
>#define DIM1_LEN 3
>#define ATT_NAME "att_name"
>
>int
>main()
>{
> hid_t fileid, grpid, spaceid, typeid, attid;
> hsize_t dims[1] = {DIM1_LEN};
> hvl_t data[DIM1_LEN];
> int *phoney;
> int i, j;
> size_t size;
>
> /* Create some phoney data, an array of struct s1, which holds a
> * pointer to a variable length array of int. */
> for (i=0; i<DIM1_LEN; i++)
> {
> if (!(phoney = malloc(sizeof(int) * i+1)))
> return NC_ENOMEM;
> for (j=0; j<i+1; j++)
> phoney[j] = -99;
> data[i].p = phoney;
> data[i].len = i+1;
> }
>
> printf("*** Checking simple HDF5 variable length types...");
>
> /* Open file. */
> if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT,
> H5P_DEFAULT)) < 0) ERR;
> if ((grpid = H5Gcreate(fileid, "grp1", 0)) < 0) ERR;
>
> /* Create VLEN type. */
> if ((typeid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) ERR;
>
> /* Although it's a vlen of ints, the size is rouned up to 8. */
> if (!(size = H5Tget_size(typeid))) ERR;
> if (size < 8) ERR;
>
> /* Write an attribute of this vlen type. */
> if ((spaceid = H5Screate_simple(1, dims, NULL)) < 0) ERR;
> if ((attid = H5Acreate(grpid, ATT_NAME, typeid, spaceid,
> H5P_DEFAULT)) < 0) ERR;
> if (H5Awrite(attid, typeid, data) < 0) ERR;
> if (H5Aclose(attid) < 0) ERR;
> if (H5Tclose(typeid) < 0) ERR;
> if (H5Gclose(grpid) < 0) ERR;
> if (H5Fclose(fileid) < 0) ERR;
>
> SUMMARIZE_ERR;
> printf("*** Checking array of compound holding a vlen...");
> {
> hid_t vlen_typeid, compound_typeid, spaceid, datasetid;
> struct sea_sounding
> {
> int sounding_no;
> hvl_t temp_vl;
> } data[DIM1_LEN];
> float *phoney;
> int i, j;
>
> /* Create phoney data. */
> for (i=0; i<DIM1_LEN; i++)
> {
> if (!(phoney = malloc(sizeof(float) * i+1)))
> return NC_ENOMEM;
> for (j=0; j<i+1; j++)
> phoney[j] = 23.5 - j;
> data[i].temp_vl.p = phoney;
> data[i].temp_vl.len = i+1;
> }
>
> /* Create file. */
> if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT,
> H5P_DEFAULT)) < 0) ERR;
> if ((grpid = H5Gcreate(fileid, "grp1", 0)) < 0) ERR;
>
> /* Create VLEN type. */
> if ((vlen_typeid = H5Tvlen_create(H5T_NATIVE_FLOAT)) < 0) ERR;
>
> /* Create a compound type that holds the vlen type. */
> if ((compound_typeid = H5Tcreate(H5T_COMPOUND,
> sizeof(struct sea_sounding))) < 0) ERR;
> if (H5Tinsert(compound_typeid, "sounding_no", HOFFSET(struct
> sea_sounding, sounding_no),
> H5T_NATIVE_INT) < 0) ERR;
> if (H5Tinsert(compound_typeid, "temp_vl", HOFFSET(struct sea_sounding,
> temp_vl),
> vlen_typeid) < 0) ERR;
> if (H5Tcommit(grpid, "sea_sounding_type", compound_typeid) < 0) ERR;
>
> if ((spaceid = H5Screate_simple(1, dims, NULL)) < 0) ERR;
> if ((datasetid = H5Dcreate(grpid, "sea_sounding_dataset",
> compound_typeid,
> spaceid, H5P_DEFAULT)) < 0) ERR;
> if (H5Dwrite(datasetid, compound_typeid, H5S_ALL, H5S_ALL, H5P_DEFAULT,
> data) < 0) ERR;
>
> if (H5Dclose(datasetid) < 0) ERR;
> if (H5Tclose(compound_typeid) < 0) ERR;
> if (H5Tclose(vlen_typeid) < 0) ERR;
> if (H5Sclose(spaceid) < 0) ERR;
> if (H5Gclose(grpid) < 0) ERR;
> if (H5Fclose(fileid) < 0) ERR;
> }
>
> SUMMARIZE_ERR;
>
>
> /* Print out our number of errors, if any, and exit badly. */
> if (total_err)
> {
> printf("%d errors detected! Sorry!\n", total_err);
> return 2;
> }
>
> printf("*** Tests successful!\n");
> return 0;
>}
>
>
>--
>Ed Hartnett -- ed@xxxxxxxxxxxxxxxx
</Pedro Vicente Nunes>
--------------------------------------------------------------
hdf.ncsa.uiuc.edu
Tel. 1-217-265 0311
netcdf-hdf archives: