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Laura, I was going to reply you on the hdf-forum list, but saw your mail here. Could you please send me config.log file (in the top directory). Information you provide is not enough. Thank you! Elena ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elena Pourmal The HDF Group http://hdfgroup.org 1800 So. Oak St., Suite 203, Champaign IL 61820 217.531.6112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On Sep 6, 2012, at 4:47 PM, ldfowler wrote: > Hi: > I have been trying for the longest time to compile the hdf5 library with the > --enable-parallel option so that I can then compile netCDF with HDF on my > MacBook Pro using Lion (10.7.4). I have been in touch with the hdf-forum > mailing list but I have not gotten any response. I assume that some of you > must have gone through the same steps to install hdf5 parallel. May be one of > you can help me figure out what I am doing wrong? > > Here are my settings: > FC=mpif90 > CC=mpicc > sudo ./configure --prefix=/usr/local/hdf5-1.8.9-gfortran --enable-parallel > --enable-fortran --with-zlib=/usr/local/zlib-1.2.7-gfortran/ > > I have tested my mpich2 implementation and know that to works. I am getting > the following error message: > > checking for API tracing... no > checking for instrumented library... no > checking whether to clear file buffers... yes > checking whether a memory checking tool will be used... no > checking for parallel support files... provided by compiler > checking for MPI_Init in -lmpi... no > checking for MPI_Init in -lmpich... no > checking for > include 'mpif.h' > integer:: ierr > call mpi_file_open( ierr ) in -lmpi... ./configure: line 27480: > ${ac_cv_lib_mpi_ ____________include__mpif_h_ ____________integer___ierr > ____________call_mpi_file_open__ierr__+:}: bad substitution > ./configure: line 27496: ac_cv_lib_mpi_: command not found > ./configure: line 27497: ____________include__mpif_h_: command not found > ./configure: line 27498: ____________integer___ierr: command not found > ./configure: line 27502: ____________include__mpif_h_: command not found > yes > checking prefix for running on one processor... > checking prefix for running in parallel... > checking whether a simple MPI-IO program can be linked... no > configure: error: unable to link a simple MPI-IO application > > I checked my mpi implementation. The subroutine mpi_file_open is in mpio.h > and not in mpif.h. So I am not sure why configure points to mpif.h and not > mpio.h. I do not know how to proceed from there from folks on the netcdf > side. Any suggestion? > > Thanks, > Laura > > !===================================================== > ! Laura D. Fowler > ! e-mail: ldfowler58@xxxxxx > ! Phone: 970-215-0516 > !===================================================== > > _______________________________________________ > netcdf-hdf mailing list > netcdf-hdf@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: > http://www.unidata.ucar.edu/mailing_lists/
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