Hi John,
We did it in the attached file. That how we provide you the OPeNDAP
dataset with time and variable aggregation for CORIOLIS objective
analysis
(http://www.ifremer.fr/thredds3/subcatalogs/DATA_CENTERS/CORIOLIS/GLOBAL-RTOA-OBS/GLOBAL-RTOA-OBS_FULL_TIME_SERIE.html?dataset=GLOBAL-RTOA-OBS_FULL_TIME_SERIE).
Cheers,
Thomas
Cheers,
Thomas
Jon Blower wrote:
Hi all,
I have an ocean modelling dataset in which different variables are
stored in different files. Also, there is one data file per timestep
for each variable. So my filesystem looks like this:
temperature_20080101.nc
salinity_20080101.nc
temperature_20080102.nc
salinity_20080102.nc
I would like to construct an NcML file that aggregates all these files
into a single dataset but am having trouble. Can I "union" the
variables together and then do a "joinExisting" on the union to
aggregate on the time dimension? Do I need more than one NcML file
perhaps, with one file referencing the other?
Thanks, Jon
--
-------------------------------------------------------------
Thomas LOUBRIEU
IFREMER IDM/ISI
BP70
29280 Plouzane
FRANCE
email: Thomas.Loubrieu@xxxxxxxxxx
WWW : http://www.coriolis.eu.org/cdc
Tel.: (+33) (0)2 98 22 48 53
Fax: (+33) (0)2 98 22 46 44
-------------------------------------------------------------
<?xml version="1.0" encoding="UTF-8"?>
<catalog xmlns:xlink="http://www.w3.org/1999/xlink"
xmlns="http://www.unidata.ucar.edu/namespaces/thredds/InvCatalog/v1.0"
name="Real Time Objective Anaysis v3.5 full time serie"
expires="2008-02-06T04:36:54">
<service name="multiService" serviceType="Compound" base="">
<service name="dods" serviceType="OPENDAP"
base="/thredds3/standard/dodsC/"/>
<service name="wcsServer" serviceType="WCS"
base="/thredds3/standard/wcs/"/>
</service>
<dataset name="Real Time Objective Anaysis v3.5 full time serie"
ID="GLOBAL-RTOA-OBS_FULL_TIME_SERIE" urlPath="GLOBAL-RTOA-OBS/FULL_TIME_SERIE">
<metadata>
<property name="aggregation-level" value="view"/>
<serviceName>multiService</serviceName>
<dataType>Grid</dataType>
<dataFormat>NetCDF</dataFormat>
<timeCoverage>
<start>2008-01-23T01:00:00</start>
<end>2004-01-07T01:00:00</end>
</timeCoverage>
</metadata>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<aggregation dimName="time" type="joinExisting">
<variableAgg name="temperature"/>
<variableAgg name="salinity"/>
<variableAgg name="temperature_pct_variance"/>
<variableAgg name="salinity_pct_variance"/>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040107.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19729.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040107.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19729.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040114.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19736.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040114.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19736.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040121.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19743.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040121.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19743.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040128.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19750.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040128.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19750.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040204.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19757.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040204.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19757.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040211.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19764.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040211.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19764.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040218.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19771.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040218.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19771.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040225.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19778.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040225.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19778.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040303.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19785.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040303.nc"
ncoords="1">
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<variable name="time" shape="time" type="float">
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<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040310.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19792.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040310.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19792.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040317.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19799.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040317.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19799.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040324.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19806.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040324.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19806.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040331.nc"
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<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
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</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
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<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040407.nc"
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<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
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<variable name="temperature"/>
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</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
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<variable name="time" shape="time" type="float">
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<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040414.nc"
ncoords="1">
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<variable name="time" shape="time" type="float">
<values start="19827.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040421.nc"
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<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040421.nc"
ncoords="1">
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<variable name="time" shape="time" type="float">
<values start="19834.000000" increment="0.000000" npts="1"/>
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<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040428.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19841.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
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<dimension name="time" length="1"/>
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<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040505.nc"
ncoords="1">
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<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
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<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040512.nc"
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<dimension name="time" length="1"/>
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<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
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ncoords="1">
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<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040519.nc"
ncoords="1">
<dimension name="time" length="1"/>
<variable name="time" shape="time" type="float">
<values start="19862.000000" increment="0.000000" npts="1"/>
</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
</netcdf>
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/temperature/weekly/CORT-GLOBAL-01/OA_20040519.nc"
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<variable name="temperature"/>
<variable name="temperature_pct_variance" orgName="pct_variance"/>
</netcdf>
</aggregation>
</netcdf>
<netcdf>
<aggregation dimName="time" type="union">
<netcdf
location="file:///home4/begmeil/coriolis_diffusion/www/data/gridded/global/salinity/weekly/CORT-GLOBAL-01/OA_20040526.nc"
ncoords="1">
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<variable name="time" shape="time" type="float">
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</variable>
<variable name="salinity"/>
<variable name="salinity_pct_variance" orgName="pct_variance"/>
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