Hi Ryan,
> we feel the best path forward is to simply
> change the package name (e.g. unidata.jj2000)
You may find the maven-shade-plugin rather useful for this.
https://maven.apache.org/plugins/maven-shade-plugin/
E.g., I created a shaded version of the Jython library to avoid conflicts
with bundled dependencies; see:
https://github.com/scijava/jython-shaded
Maybe it helps as a starting point.
Regards,
Curtis
On Fri, May 22, 2015 at 4:36 PM, Ryan May <rmay@xxxxxxxx> wrote:
> Daniele,
>
> After discussing it yesterday, we feel the best path forward is to simply
> change the package name (e.g. unidata.jj2000). It's important that we use
> this particular jj2000, rather than the jai_imageio one, because ours
> contains fixes specifically for GRIB (for example, 1-bit images).
>
> I'm targeting having this work done in time for the next bugfix release,
> 4.6.2.
>
> Ryan
>
> On Thu, May 21, 2015 at 5:06 AM, Daniele Romagnoli <
> daniele.romagnoli@xxxxxxxxxxxxxxxx> wrote:
>
>> Hi again,
>> do you have any news or action plan about this topic?
>>
>> Please, let me know.
>> Best Regards,
>> Daniele
>>
>> On Thu, Apr 30, 2015 at 12:12 PM, Daniele Romagnoli <
>> daniele.romagnoli@xxxxxxxxxxxxxxxx> wrote:
>>
>>> Hi again,
>>> For the moment, I have temporarly fixed by removing some classes from
>>> the jai_imageio-1.1.jar. That's not the best solutions but it allows me to
>>> proceed with my tests.
>>> Is there any chance for the next NetCDF-java/grib release to have that
>>> jj2k dependency (edu\ucar\jj2000\5.2) split into different jars?
>>> one containing the "duplicated" part from jai_imageio and one containing
>>> the "added" parts?
>>> By this way, for projects leveraging on jai_imageio (such as GeoTools,
>>> GeoServer, ...) one may add some "exclusions" section to the pom in order
>>> to avoid using the external jj2k jar in favor of the jai_imageio one.
>>>
>>> Please, let me know.
>>> Best Regards,
>>> Daniele
>>>
>>>
>>> ==
>>> GeoServer Professional Services from the experts! Visit
>>> http://goo.gl/NWWaa2 for more information.
>>> ==
>>>
>>> Ing. Daniele Romagnoli
>>> Senior Software Engineer
>>>
>>> GeoSolutions S.A.S.
>>> Via Poggio alle Viti 1187
>>> 55054 Massarosa (LU)
>>> Italy
>>> phone: +39 0584 962313
>>> fax: +39 0584 1660272
>>>
>>> http://www.geo-solutions.it
>>> http://twitter.com/geosolutions_it
>>>
>>> -------------------------------------------------------
>>>
>>> *AVVERTENZE AI SENSI DEL D.Lgs. 196/2003*
>>>
>>> Le informazioni contenute in questo messaggio di posta elettronica e/o
>>> nel/i file/s allegato/i sono da considerarsi strettamente riservate. Il
>>> loro utilizzo è consentito esclusivamente al destinatario del messaggio,
>>> per le finalità indicate nel messaggio stesso. Qualora riceviate questo
>>> messaggio senza esserne il destinatario, Vi preghiamo cortesemente di
>>> darcene notizia via e-mail e di procedere alla distruzione del messaggio
>>> stesso, cancellandolo dal Vostro sistema. Conservare il messaggio stesso,
>>> divulgarlo anche in parte, distribuirlo ad altri soggetti, copiarlo, od
>>> utilizzarlo per finalità diverse, costituisce comportamento contrario ai
>>> principi dettati dal D.Lgs. 196/2003.
>>>
>>>
>>>
>>> The information in this message and/or attachments, is intended solely
>>> for the attention and use of the named addressee(s) and may be confidential
>>> or proprietary in nature or covered by the provisions of privacy act
>>> (Legislative Decree June, 30 2003, no.196 - Italy's New Data Protection
>>> Code).Any use not in accord with its purpose, any disclosure, reproduction,
>>> copying, distribution, or either dissemination, either whole or partial, is
>>> strictly forbidden except previous formal approval of the named
>>> addressee(s). If you are not the intended recipient, please contact
>>> immediately the sender by telephone, fax or e-mail and delete the
>>> information in this message that has been received in error. The sender
>>> does not give any warranty or accept liability as the content, accuracy or
>>> completeness of sent messages and accepts no responsibility for changes
>>> made after they were sent or for other risks which arise as a result of
>>> e-mail transmission, viruses, etc.
>>>
>>>
>>> On Wed, Apr 22, 2015 at 10:27 AM, Daniele Romagnoli <
>>> daniele.romagnoli@xxxxxxxxxxxxxxxx> wrote:
>>>
>>>> Hi Ryan,
>>>> Thanks for the reply.
>>>> I have already tried this approach.
>>>> However, as you say, the JAI is missing some entries, such as
>>>> jj2000.j2k.util.ParameterList which is only available in the GRIB package.
>>>> For the moment, I'll try the opposite approach, by working on a reduced
>>>> jai-imageio.jar without the whole jj2000 package.
>>>>
>>>> Cheers,
>>>> Daniele
>>>>
>>>>
>>>>
>>>> ==
>>>> GeoServer Professional Services from the experts! Visit
>>>> http://goo.gl/NWWaa2 for more information.
>>>> ==
>>>>
>>>> Ing. Daniele Romagnoli
>>>> Senior Software Engineer
>>>>
>>>> GeoSolutions S.A.S.
>>>> Via Poggio alle Viti 1187
>>>> 55054 Massarosa (LU)
>>>> Italy
>>>> phone: +39 0584 962313
>>>> fax: +39 0584 1660272
>>>>
>>>> http://www.geo-solutions.it
>>>> http://twitter.com/geosolutions_it
>>>>
>>>> -------------------------------------------------------
>>>>
>>>> *AVVERTENZE AI SENSI DEL D.Lgs. 196/2003*
>>>>
>>>> Le informazioni contenute in questo messaggio di posta elettronica e/o
>>>> nel/i file/s allegato/i sono da considerarsi strettamente riservate. Il
>>>> loro utilizzo è consentito esclusivamente al destinatario del messaggio,
>>>> per le finalità indicate nel messaggio stesso. Qualora riceviate questo
>>>> messaggio senza esserne il destinatario, Vi preghiamo cortesemente di
>>>> darcene notizia via e-mail e di procedere alla distruzione del messaggio
>>>> stesso, cancellandolo dal Vostro sistema. Conservare il messaggio stesso,
>>>> divulgarlo anche in parte, distribuirlo ad altri soggetti, copiarlo, od
>>>> utilizzarlo per finalità diverse, costituisce comportamento contrario ai
>>>> principi dettati dal D.Lgs. 196/2003.
>>>>
>>>>
>>>>
>>>> The information in this message and/or attachments, is intended solely
>>>> for the attention and use of the named addressee(s) and may be confidential
>>>> or proprietary in nature or covered by the provisions of privacy act
>>>> (Legislative Decree June, 30 2003, no.196 - Italy's New Data Protection
>>>> Code).Any use not in accord with its purpose, any disclosure, reproduction,
>>>> copying, distribution, or either dissemination, either whole or partial, is
>>>> strictly forbidden except previous formal approval of the named
>>>> addressee(s). If you are not the intended recipient, please contact
>>>> immediately the sender by telephone, fax or e-mail and delete the
>>>> information in this message that has been received in error. The sender
>>>> does not give any warranty or accept liability as the content, accuracy or
>>>> completeness of sent messages and accepts no responsibility for changes
>>>> made after they were sent or for other risks which arise as a result of
>>>> e-mail transmission, viruses, etc.
>>>>
>>>>
>>>> On Tue, Apr 21, 2015 at 9:41 PM, Ryan May <rmay@xxxxxxxx> wrote:
>>>>
>>>>> Daniele,
>>>>>
>>>>> You could unjar (or unzip) the netcdf-java jar (netcdfAll-4.5.jar ?),
>>>>> remove the jj2000 directory, and re-pack it into a new jar. I have no
>>>>> idea,
>>>>> though, if the jai version of the jj2000 code provides all of the APIs
>>>>> that
>>>>> are used to read GRIB files.
>>>>>
>>>>> Ryan
>>>>>
>>>>> On Tue, Apr 21, 2015 at 5:07 AM, Daniele Romagnoli <
>>>>> daniele.romagnoli@xxxxxxxxxxxxxxxx> wrote:
>>>>>
>>>>>> Hi again.
>>>>>> I have also found this thread:
>>>>>>
>>>>>> https://www.unidata.ucar.edu/mailing_lists/archives/thredds/2014/msg00233.html
>>>>>>
>>>>>> That's basically the problem I have.
>>>>>> To summarize, I'm trying to read a grib file which uses the jj2000
>>>>>> machinery and I'm having exceptions since I also have jai-imageio on my
>>>>>> classpath (I can't remove jai-imageio from the classpath).
>>>>>>
>>>>>> Do you have any suggestions for this?
>>>>>> Cheers,
>>>>>> Daniele
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> ==
>>>>>> GeoServer Professional Services from the experts! Visit
>>>>>> http://goo.gl/NWWaa2 for more information.
>>>>>> ==
>>>>>>
>>>>>> Ing. Daniele Romagnoli
>>>>>> Senior Software Engineer
>>>>>>
>>>>>> GeoSolutions S.A.S.
>>>>>> Via Poggio alle Viti 1187
>>>>>> 55054 Massarosa (LU)
>>>>>> Italy
>>>>>> phone: +39 0584 962313
>>>>>> fax: +39 0584 1660272
>>>>>>
>>>>>> http://www.geo-solutions.it
>>>>>> http://twitter.com/geosolutions_it
>>>>>>
>>>>>> -------------------------------------------------------
>>>>>>
>>>>>> *AVVERTENZE AI SENSI DEL D.Lgs. 196/2003*
>>>>>>
>>>>>> Le informazioni contenute in questo messaggio di posta elettronica
>>>>>> e/o nel/i file/s allegato/i sono da considerarsi strettamente riservate.
>>>>>> Il
>>>>>> loro utilizzo è consentito esclusivamente al destinatario del messaggio,
>>>>>> per le finalità indicate nel messaggio stesso. Qualora riceviate questo
>>>>>> messaggio senza esserne il destinatario, Vi preghiamo cortesemente di
>>>>>> darcene notizia via e-mail e di procedere alla distruzione del messaggio
>>>>>> stesso, cancellandolo dal Vostro sistema. Conservare il messaggio stesso,
>>>>>> divulgarlo anche in parte, distribuirlo ad altri soggetti, copiarlo, od
>>>>>> utilizzarlo per finalità diverse, costituisce comportamento contrario ai
>>>>>> principi dettati dal D.Lgs. 196/2003.
>>>>>>
>>>>>>
>>>>>>
>>>>>> The information in this message and/or attachments, is intended
>>>>>> solely for the attention and use of the named addressee(s) and may be
>>>>>> confidential or proprietary in nature or covered by the provisions of
>>>>>> privacy act (Legislative Decree June, 30 2003, no.196 - Italy's New Data
>>>>>> Protection Code).Any use not in accord with its purpose, any disclosure,
>>>>>> reproduction, copying, distribution, or either dissemination, either
>>>>>> whole
>>>>>> or partial, is strictly forbidden except previous formal approval of the
>>>>>> named addressee(s). If you are not the intended recipient, please contact
>>>>>> immediately the sender by telephone, fax or e-mail and delete the
>>>>>> information in this message that has been received in error. The sender
>>>>>> does not give any warranty or accept liability as the content, accuracy
>>>>>> or
>>>>>> completeness of sent messages and accepts no responsibility for changes
>>>>>> made after they were sent or for other risks which arise as a result of
>>>>>> e-mail transmission, viruses, etc.
>>>>>>
>>>>>>
>>>>>> On Fri, Apr 17, 2015 at 3:36 PM, Daniele Romagnoli <
>>>>>> daniele.romagnoli@xxxxxxxxxxxxxxxx> wrote:
>>>>>>
>>>>>>> Hi List,
>>>>>>> I have basically the same issue reported by Akkineni Vijay.
>>>>>>>
>>>>>>> When reading some types of grib files I'm getting the exception
>>>>>>> reported at the end of the email. I have checked a couple of similar
>>>>>>> emails
>>>>>>> in the mailing list but it's not too clear to me how to resolve that.
>>>>>>> Note that my project also uses jai_imageio.jar which contains Oracle
>>>>>>> classes to do JAI ImageRead operations using ImageIO SPIs.
>>>>>>> That jar also contains a jj2000.j2k.* packages.
>>>>>>>
>>>>>>> Do you have any suggestion?
>>>>>>> Please, let me know.
>>>>>>>
>>>>>>> Best Regards,
>>>>>>> Daniele
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> java.lang.SecurityException: sealing violation: package
>>>>>>> jj2000.j2k.util is sealed
>>>>>>> at
>>>>>>> java.net.URLClassLoader.getAndVerifyPackage(URLClassLoader.java:388)
>>>>>>> at java.net.URLClassLoader.defineClass(URLClassLoader.java:417)
>>>>>>> at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
>>>>>>> at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
>>>>>>> at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
>>>>>>> at java.security.AccessController.doPrivileged(Native Method)
>>>>>>> at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
>>>>>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
>>>>>>> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
>>>>>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
>>>>>>> at
>>>>>>> ucar.nc2.grib.grib2.Grib2JpegDecoder.<init>(Grib2JpegDecoder.java:119)
>>>>>>> at
>>>>>>> ucar.nc2.grib.grib2.Grib2DataReader2.getData40(Grib2DataReader2.java:727)
>>>>>>> at
>>>>>>> ucar.nc2.grib.grib2.Grib2DataReader2.getData(Grib2DataReader2.java:109)
>>>>>>> at ucar.nc2.grib.grib2.Grib2Record.readData(Grib2Record.java:321)
>>>>>>> at
>>>>>>> ucar.nc2.grib.collection.Grib2Iosp.readData(Grib2Iosp.java:405)
>>>>>>> at
>>>>>>> ucar.nc2.grib.collection.GribIosp$DataReader.read(GribIosp.java:940)
>>>>>>> at
>>>>>>> ucar.nc2.grib.collection.GribIosp.readDataFromCollection(GribIosp.java:860)
>>>>>>> at ucar.nc2.grib.collection.GribIosp.readData(GribIosp.java:810)
>>>>>>> at ucar.nc2.NetcdfFile.readData(NetcdfFile.java:1986)
>>>>>>> at ucar.nc2.Variable.reallyRead(Variable.java:899)
>>>>>>> at ucar.nc2.Variable._read(Variable.java:884)
>>>>>>> at ucar.nc2.Variable.read(Variable.java:695)
>>>>>>> at ucar.nc2.dataset.VariableDS.reallyRead(VariableDS.java:557)
>>>>>>> at ucar.nc2.dataset.VariableDS._read(VariableDS.java:537)
>>>>>>> at ucar.nc2.Variable.read(Variable.java:695)
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> ==
>>>>>>> GeoServer Professional Services from the experts! Visit
>>>>>>> http://goo.gl/NWWaa2 for more information.
>>>>>>> ==
>>>>>>>
>>>>>>> Ing. Daniele Romagnoli
>>>>>>> Senior Software Engineer
>>>>>>>
>>>>>>> GeoSolutions S.A.S.
>>>>>>> Via Poggio alle Viti 1187
>>>>>>> 55054 Massarosa (LU)
>>>>>>> Italy
>>>>>>> phone: +39 0584 962313
>>>>>>> fax: +39 0584 1660272
>>>>>>>
>>>>>>> http://www.geo-solutions.it
>>>>>>> http://twitter.com/geosolutions_it
>>>>>>>
>>>>>>> -------------------------------------------------------
>>>>>>>
>>>>>>> *AVVERTENZE AI SENSI DEL D.Lgs. 196/2003*
>>>>>>>
>>>>>>> Le informazioni contenute in questo messaggio di posta elettronica
>>>>>>> e/o nel/i file/s allegato/i sono da considerarsi strettamente
>>>>>>> riservate. Il
>>>>>>> loro utilizzo è consentito esclusivamente al destinatario del messaggio,
>>>>>>> per le finalità indicate nel messaggio stesso. Qualora riceviate questo
>>>>>>> messaggio senza esserne il destinatario, Vi preghiamo cortesemente di
>>>>>>> darcene notizia via e-mail e di procedere alla distruzione del messaggio
>>>>>>> stesso, cancellandolo dal Vostro sistema. Conservare il messaggio
>>>>>>> stesso,
>>>>>>> divulgarlo anche in parte, distribuirlo ad altri soggetti, copiarlo, od
>>>>>>> utilizzarlo per finalità diverse, costituisce comportamento contrario ai
>>>>>>> principi dettati dal D.Lgs. 196/2003.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> The information in this message and/or attachments, is intended
>>>>>>> solely for the attention and use of the named addressee(s) and may be
>>>>>>> confidential or proprietary in nature or covered by the provisions of
>>>>>>> privacy act (Legislative Decree June, 30 2003, no.196 - Italy's New Data
>>>>>>> Protection Code).Any use not in accord with its purpose, any disclosure,
>>>>>>> reproduction, copying, distribution, or either dissemination, either
>>>>>>> whole
>>>>>>> or partial, is strictly forbidden except previous formal approval of the
>>>>>>> named addressee(s). If you are not the intended recipient, please
>>>>>>> contact
>>>>>>> immediately the sender by telephone, fax or e-mail and delete the
>>>>>>> information in this message that has been received in error. The sender
>>>>>>> does not give any warranty or accept liability as the content, accuracy
>>>>>>> or
>>>>>>> completeness of sent messages and accepts no responsibility for changes
>>>>>>> made after they were sent or for other risks which arise as a result of
>>>>>>> e-mail transmission, viruses, etc.
>>>>>>>
>>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> netcdf-java mailing list
>>>>>> netcdf-java@xxxxxxxxxxxxxxxx
>>>>>> For list information or to unsubscribe, visit:
>>>>>> http://www.unidata.ucar.edu/mailing_lists/
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Ryan May
>>>>> Software Engineer
>>>>> UCAR/Unidata
>>>>> Boulder, CO
>>>>>
>>>>
>>>>
>>>
>>
>>
>> --
>> ==
>> Meet us at the INSPIRE Conference in Lisbon 25-29 May 2015! Visit
>> http://goo.gl/WHKDXT for more information.
>> ==
>>
>> Ing. Daniele Romagnoli
>> Senior Software Engineer
>>
>> GeoSolutions S.A.S.
>> Via Poggio alle Viti 1187
>> 55054 Massarosa (LU)
>> Italy
>> phone: +39 0584 962313
>> fax: +39 0584 1660272
>>
>> http://www.geo-solutions.it
>> http://twitter.com/geosolutions_it
>>
>> -------------------------------------------------------
>>
>> *AVVERTENZE AI SENSI DEL D.Lgs. 196/2003*
>>
>> Le informazioni contenute in questo messaggio di posta elettronica e/o
>> nel/i file/s allegato/i sono da considerarsi strettamente riservate. Il
>> loro utilizzo è consentito esclusivamente al destinatario del messaggio,
>> per le finalità indicate nel messaggio stesso. Qualora riceviate questo
>> messaggio senza esserne il destinatario, Vi preghiamo cortesemente di
>> darcene notizia via e-mail e di procedere alla distruzione del messaggio
>> stesso, cancellandolo dal Vostro sistema. Conservare il messaggio stesso,
>> divulgarlo anche in parte, distribuirlo ad altri soggetti, copiarlo, od
>> utilizzarlo per finalità diverse, costituisce comportamento contrario ai
>> principi dettati dal D.Lgs. 196/2003.
>>
>>
>>
>> The information in this message and/or attachments, is intended solely
>> for the attention and use of the named addressee(s) and may be confidential
>> or proprietary in nature or covered by the provisions of privacy act
>> (Legislative Decree June, 30 2003, no.196 - Italy's New Data Protection
>> Code).Any use not in accord with its purpose, any disclosure, reproduction,
>> copying, distribution, or either dissemination, either whole or partial, is
>> strictly forbidden except previous formal approval of the named
>> addressee(s). If you are not the intended recipient, please contact
>> immediately the sender by telephone, fax or e-mail and delete the
>> information in this message that has been received in error. The sender
>> does not give any warranty or accept liability as the content, accuracy or
>> completeness of sent messages and accepts no responsibility for changes
>> made after they were sent or for other risks which arise as a result of
>> e-mail transmission, viruses, etc.
>>
>>
>
>
> --
> Ryan May
> Software Engineer
> UCAR/Unidata
> Boulder, CO
>
> _______________________________________________
> netcdf-java mailing list
> netcdf-java@xxxxxxxxxxxxxxxx
> For list information or to unsubscribe, visit:
> http://www.unidata.ucar.edu/mailing_lists/
>
>
