[netcdf-porting] error while configuring netcdf-4.1.2

• To: netcdfgroup@xxxxxxxxxxxxxxxx, netcdf-porting@xxxxxxxxxxxxxxxx
• Subject: [netcdf-porting] error while configuring netcdf-4.1.2
• From: akshar bhosale <akshar.bhosale@xxxxxxxxx>
• Date: Sat, 18 Aug 2012 16:47:35 +0530

Hi
i am trying to configure netcdf -4.1.2 on rhel 5.2 x86_64 machine.
I have configured pnetcdf .
configure options provided for netcdf are :
./configure --prefix=/home/lara/netcdf-4.1.2/BUILD --enable-shared
--disable-netcdf-4 --enable-pnetcdf --with-pnetcdf=/home/lara/pnetcdf

environment is :
########################

export MPIF77=/opt/intel/mpi/bin64/mpif90
export MPIF90=/opt/intel/mpi/bin64/mpif90
export F77=/opt/intel/mpi/bin64/mpif90
export FC=/opt/intel/mpi/bin64/mpif90
export CC=/opt/intel/mpi/bin64/mpiicc
export MPICC=/opt/intel/mpi/bin64/mpiicc
export MPICXX=/opt/intel/mpi/bin64/mpicxx
export PNETCDF=/home/lara/pnetcdf
##############################



i am getting following error while performing "make check"

#######################################################################
*** All nccopy tests passed!
PASS: tst_nccopy3.sh
*** Testing ncgen with -k1
*** XFAIL: ref_tst_chardata
+ echo '*** PASSED: 12/12 ; 1 expected failures ; 0 unexpected failures'
*** PASSED: 12/12 ; 1 expected failures ; 0 unexpected failures
+ test 0 -gt 0
+ exit 0
*** Cycle testing ncgen with -k1
xfail test: ref_tst_chardata: ignored
*** PASSED: 16/16 ; 0 unexpected failures; 1 expected failures ignored
PASS: tst_ncgen4_classic.sh
===================
All 11 tests passed
===================
make[4]: Leaving directory `/home/lara/netcdf/netcdf-4.1.2/ncdump'
make[3]: Leaving directory `/home/lara/netcdf/netcdf-4.1.2/ncdump'
make[2]: Leaving directory `/home/lara/netcdf/netcdf-4.1.2/ncdump'
make[1]: Leaving directory `/home/lara/netcdf/netcdf-4.1.2/ncdump'
Making check in nf_test
make[1]: Entering directory `/home/lara/netcdf/netcdf-4.1.2/nf_test'
make  nf_test tst_f77_v2         ftest tst_f90
make[2]: Entering directory `/home/lara/netcdf/netcdf-4.1.2/nf_test'
/bin/sh ../libtool --tag=F77   --mode=link /opt/intel/mpi/bin64/mpif90
-I../fortran -I../f90 -I../include -I../liblib  -g -O2
-L/home/lara/wrf/pnetcdf/lib -o nf_test test_get.o test_put.o
nf_error.o nf_test.o test_read.o test_write.o util.o fortlib.o
../fortran/li
bnetcdff.la -lm ../liblib/libnetcdf.la -lz -L/usr/kerberos/lib64
-lcurl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lresolv -ldl -lidn
-lssl -lc
rypto -lz    -lz
libtool: link: /opt/intel/mpi/bin64/mpif90 -I../fortran -I../f90
-I../include -I../liblib -g -O2 -o .libs/nf_test test_get.o test_put.o
nf_erro
r.o nf_test.o test_read.o test_write.o util.o fortlib.o
-L/home/lara/pnetcdf/lib ../fortran/.libs/libnetcdff.so -L/us
r/kerberos/lib64 -lm ../liblib/.libs/libnetcdf.so -lcurl -lgssapi_krb5
-lkrb5 -lk5crypto -lcom_err -lresolv -ldl -lidn -lssl -lcrypto -lz
-Wl,-
rpath -Wl,/home/lara/netcdf/netcdf-4.1.2/BUILD/lib
test_get.o: In function `test_nf_get_att_double_':
/home/lara/netcdf/netcdf-4.1.2/nf_test/test_get.F:5511: undefined
reference to `nf_open_'
/home/lara/netcdf/netcdf-4.1.2/nf_test/test_get.F:5521: undefined
reference to `nf_get_att_double_'
/home/lara/netcdf/netcdf-4.1.2/nf_test/test_get.F:5526: undefined
reference to `nf_get_att_double_'
/home/lara/netcdf/netcdf-4.1.2/nf_test/test_get.F:5529: undefined
reference to `nf_get_att_double_'
/home/lara/netcdf/netcdf-4.1.2/nf_test/test_get.F:5547: undefined
reference to `nf_get_att_double_'
/home/lara/netcdf/netcdf-4.1.2/nf_test/test_get.F:5594: undefined
reference to `nf_close_'
test_get.o: In function `test_nf_get_att_real_':
/home/lara/netcdf/netcdf-4.1.2/nf_test/test_get.F:5403: undefined
reference to `nf_open_'
/home/lara/netcdf/netcdf-4.1.2/nf_test/test_get.F:5413: undefined
reference to `nf_get_att_real_'

##################################################################
configure does not throw any error, but make throws. Removing pnetcdf
directory from configure also does not help.
Please let me know the issue.

-a . bhosale