Re: [netcdfgroup] Met compile error with netcdf 4.0.1

• To: brick <brickflying@xxxxxxxxx>
• Subject: Re: [netcdfgroup] Met compile error with netcdf 4.0.1
• From: Ted Mansell <ted.mansell@xxxxxxxx>
• Date: Fri, 10 Jul 2009 18:24:34 -0500

-- Ted


On Jul 10, 2009, at 5:25 PM, brick wrote:

Hi All

I met a compile error with netcdf 4.0.1. when I compiled a f90 file to read netcdf data.

The compiler is ifort 11.1
This is the configure I used on netcdf.
/configure --with-hdf5=/usr/local/hdf5_gcc --with-zlib=/usr/local
--disable-shared -prefix=/usr/local/netcdf-4.0_gcc --disable-f90
--enable-netcdf-4
netcdf lib was successfully installed.

This is the error information:
-L/usr/local/netcdf-4.0_gcc/lib -lnetcdf

/usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4attr.o): In function `nc_del_att': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4attr.c:813: undefined reference to `H5Dclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4attr.c:802: undefined reference to `H5Adelete' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4attr.o): In function `nc_rename_att': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4attr.c:714: undefined reference to `H5Dclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4internal.o): In function `type_list_del': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:930: undefined reference to `H5Tclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4internal.o): In function `var_list_del': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:893: undefined reference to `H5Dclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4internal.o): In function `nc4_rec_grp_del': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:1034: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:1050: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:1047: undefined reference to `H5Dclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:1065: undefined reference to `H5Dclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:1087: undefined reference to `H5Gclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4internal.o): In function `find_var_shape_grp': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:133: undefined reference to `H5Sclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:135: undefined reference to `H5Dclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:102: undefined reference to `H5Dget_space' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:105: undefined reference to `H5Sget_simple_extent_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:113: undefined reference to `H5Sget_simple_extent_ndims' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:121: undefined reference to `H5Sget_simple_extent_dims' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4internal.o): In function `nc4_rec_find_hdf_type': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4internal.c:394: undefined reference to `H5Tequal' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4var.o): In function `nc_rename_var': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4var.c:797: undefined reference to `H5Gmove' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4file.o): In function `sync_netcdf4_file': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:766: undefined reference to `H5Fflush' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4file.o): In function `close_netcdf4_file': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:833: undefined reference to `H5Fclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4file.o): In function `nc_open_file': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:514: undefined reference to `H5Eset_auto1' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4file.o): In function `nc4_open_file': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:388: undefined reference to `H5check_version' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:402: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:402: undefined reference to `H5P_CLS_FILE_ACCESS_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:402: undefined reference to `H5Pcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:405: undefined reference to `H5Pset_fclose_degree' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:471: undefined reference to `H5Pclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:472: undefined reference to `H5Fclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:388: undefined reference to `H5check_version' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:408: undefined reference to `H5Pset_cache' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:433: undefined reference to `H5Pset_libver_bounds' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:439: undefined reference to `H5Fopen' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4file.o): In function `nc_create_file': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:280: undefined reference to `H5Eset_auto1' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4file.o): In function `nc4_create_file': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:177: undefined reference to `H5check_version' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:200: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:200: undefined reference to `H5P_CLS_FILE_ACCESS_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:200: undefined reference to `H5Pcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:203: undefined reference to `H5Pset_fclose_degree' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:262: undefined reference to `H5Fclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:177: undefined reference to `H5check_version' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:205: undefined reference to `H5Pset_cache' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:232: undefined reference to `H5Pset_libver_bounds' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:234: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:234: undefined reference to `H5P_CLS_FILE_CREATE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:234: undefined reference to `H5Pcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:236: undefined reference to `H5Pset_link_creation_order' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:239: undefined reference to `H5Pset_attr_creation_order' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:244: undefined reference to `H5Fcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:248: undefined reference to `H5Gopen2' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4file.c:253: undefined reference to `H5Pclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_rec_match_dimscales': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4630: undefined reference to `H5Gget_objinfo' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `dimscale_visitor': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:125: undefined reference to `H5Gget_objinfo' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `get_netcdf_type': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1202: undefined reference to `H5Tget_class' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1220: undefined reference to `H5Tget_native_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1223: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1223: undefined reference to `H5T_NATIVE_SCHAR_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1223: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1209: undefined reference to `H5Tis_variable_str' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1230: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1230: undefined reference to `H5T_NATIVE_SHORT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1230: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1237: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1237: undefined reference to `H5T_NATIVE_INT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1237: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1244: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1244: undefined reference to `H5T_NATIVE_FLOAT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1244: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1251: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1251: undefined reference to `H5T_NATIVE_DOUBLE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1251: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1258: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1258: undefined reference to `H5T_NATIVE_UCHAR_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1258: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1265: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1265: undefined reference to `H5T_NATIVE_USHORT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1265: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1272: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1272: undefined reference to `H5T_NATIVE_UINT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1272: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1279: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1279: undefined reference to `H5T_NATIVE_LLONG_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1279: undefined reference to `H5Tequal' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1286: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1286: undefined reference to `H5T_NATIVE_ULLONG_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1286: undefined reference to `H5Tequal' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_open_var_grp2': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:175: undefined reference to `H5Dopen1' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_open_var_grp': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:152: undefined reference to `H5Dopen1' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_free_global_hdf_string_typeid': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:495: undefined reference to `H5Tclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `get_hdf_typeid': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:453: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:453: undefined reference to `H5T_NATIVE_ULLONG_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:445: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:445: undefined reference to `H5T_NATIVE_LLONG_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:437: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:437: undefined reference to `H5T_NATIVE_UINT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:429: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:429: undefined reference to `H5T_NATIVE_USHORT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:421: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:421: undefined reference to `H5T_NATIVE_UCHAR_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:397: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:397: undefined reference to `H5T_NATIVE_INT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:389: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:389: undefined reference to `H5T_NATIVE_SHORT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:413: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:413: undefined reference to `H5T_NATIVE_DOUBLE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:405: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:405: undefined reference to `H5T_NATIVE_FLOAT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:378: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:378: undefined reference to `H5T_C_S1_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:378: undefined reference to `H5Tcopy' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:379: undefined reference to `H5Tset_strpad' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:375: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:375: undefined reference to `H5T_NATIVE_SCHAR_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:411: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:411: undefined reference to `H5T_IEEE_F64BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:395: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:395: undefined reference to `H5T_STD_I32BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:435: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:435: undefined reference to `H5T_STD_U32BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:387: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:387: undefined reference to `H5T_STD_I16BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:419: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:419: undefined reference to `H5T_STD_U8BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:403: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:403: undefined reference to `H5T_IEEE_F32BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:427: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:427: undefined reference to `H5T_STD_U16BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:443: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:443: undefined reference to `H5T_STD_I64BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:451: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:451: undefined reference to `H5T_STD_U64BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:373: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:373: undefined reference to `H5T_STD_I8BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:449: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:449: undefined reference to `H5T_STD_U64LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:371: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:371: undefined reference to `H5T_STD_I8LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:425: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:425: undefined reference to `H5T_STD_U16LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:441: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:441: undefined reference to `H5T_STD_I64LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:417: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:417: undefined reference to `H5T_STD_U8LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:401: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:401: undefined reference to `H5T_IEEE_F32LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:433: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:433: undefined reference to `H5T_STD_U32LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:385: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:385: undefined reference to `H5T_STD_I16LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:409: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:409: undefined reference to `H5T_IEEE_F64LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:393: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:393: undefined reference to `H5T_STD_I32LE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:460: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:460: undefined reference to `H5T_C_S1_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:460: undefined reference to `H5Tcopy' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:485: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:462: undefined reference to `H5Tset_size' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `rec_reattach_scales': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:67: undefined reference to `H5DSattach_scale' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_delete_hdf5_att': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2012: undefined reference to `H5Aget_num_attrs' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2017: undefined reference to `H5Aopen_idx' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2019: undefined reference to `H5Aget_name' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2028: undefined reference to `H5Aclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2024: undefined reference to `H5Adelete' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `pg_att_grpa': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1777: undefined reference to `H5Dclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1779: undefined reference to `H5Aclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1781: undefined reference to `H5Sclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1610: undefined reference to `H5Aopen_name' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1614: undefined reference to `H5Aget_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1616: undefined reference to `H5Tget_class' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1622: undefined reference to `H5Aget_space' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1624: undefined reference to `H5Sget_simple_extent_ndims' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1626: undefined reference to `H5Sget_simple_extent_npoints' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1758: undefined reference to `H5Screate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1767: undefined reference to `H5Acreate1' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1772: undefined reference to `H5Awrite' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1763: undefined reference to `H5Screate_simple' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1741: undefined reference to `H5Screate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1749: undefined reference to `H5Tset_size' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1751: undefined reference to `H5Tset_strpad' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1746: undefined reference to `H5Screate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1658: undefined reference to `H5Sget_simple_extent_dims' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1694: undefined reference to `H5Tget_native_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1696: undefined reference to `H5Aread' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1698: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1702: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1674: undefined reference to `H5Tget_native_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1687: undefined reference to `H5Aread' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1641: undefined reference to `H5Tget_size' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_rec_read_metadata': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4417: undefined reference to `H5Gopen2' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4429: undefined reference to `H5Gget_num_objs' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4433: undefined reference to `H5Oget_info_by_idx' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4437: undefined reference to `H5Lget_name_by_idx' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4442: undefined reference to `H5Lget_name_by_idx' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_grp_atts': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4285: undefined reference to `H5Aget_num_attrs' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4290: undefined reference to `H5Aopen_idx' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4292: undefined reference to `H5Aget_name' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4289: undefined reference to `H5Aclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_type': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1967: undefined reference to `H5Tget_nmembers' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1982: undefined reference to `H5Tget_member_value' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1978: undefined reference to `H5Tget_member_name' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_rec_read_metadata': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4495: undefined reference to `H5Gclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_dataset': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4343: undefined reference to `H5Dopen1' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4347: undefined reference to `H5Dget_space' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4349: undefined reference to `H5Sget_simple_extent_ndims' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4353: undefined reference to `H5Sget_simple_extent_dims' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4357: undefined reference to `H5DSis_scale' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_scale': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:3992: undefined reference to `H5DSget_scale_name' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_dataset': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4387: undefined reference to `H5Dclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4389: undefined reference to `H5Sclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_grp_atts': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4323: undefined reference to `H5Aclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_type': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1813: undefined reference to `H5Topen2' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1817: undefined reference to `H5Tget_class' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_rec_read_metadata': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4422: undefined reference to `H5Gopen2' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_type': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1866: undefined reference to `H5Tget_size' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1875: undefined reference to `H5Tget_super' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1878: undefined reference to `H5Tget_size' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1841: undefined reference to `H5Tis_variable_str' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1850: undefined reference to `H5Tget_super' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1853: undefined reference to `H5Tget_size' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1828: undefined reference to `H5Tget_native_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1830: undefined reference to `H5Tget_size' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1832: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1912: undefined reference to `H5Tget_nmembers' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1941: undefined reference to `H5Tget_super' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1922: undefined reference to `H5Tget_member_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1924: undefined reference to `H5Tget_class' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1935: undefined reference to `H5Tget_member_name' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1936: undefined reference to `H5Tget_member_offset' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1928: undefined reference to `H5Tget_array_ndims' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1930: undefined reference to `H5Tget_array_dims1' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_dataset': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4371: undefined reference to `H5DSget_num_scales' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_var': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4085: undefined reference to `H5Dget_create_plist' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4089: undefined reference to `H5Pget_layout' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4103: undefined reference to `H5Pget_nfilters' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4107: undefined reference to `H5Pget_filter2' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4158: undefined reference to `H5Tget_native_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4160: undefined reference to `H5Tget_size' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4167: undefined reference to `H5Pget_fill_value' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4169: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4266: undefined reference to `H5Pclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4268: undefined reference to `H5Aclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4093: undefined reference to `H5Pget_chunk' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4132: undefined reference to `H5Dget_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4137: undefined reference to `H5Tget_class' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4141: undefined reference to `H5Tget_order' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4150: undefined reference to `H5Pfill_value_defined' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_coord_dimids': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4027: undefined reference to `H5Aopen_name' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4028: undefined reference to `H5Aget_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4029: undefined reference to `H5Aread' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4033: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4034: undefined reference to `H5Aclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `read_var': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4221: undefined reference to `H5Aget_num_attrs' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4232: undefined reference to `H5Aopen_idx' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4234: undefined reference to `H5Aget_name' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4228: undefined reference to `H5Aclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:4206: undefined reference to `H5DSiterate_scales' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `commit_type': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2114: undefined reference to `H5Tenum_create' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2119: undefined reference to `H5Tenum_insert' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2094: undefined reference to `H5Tvlen_create' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2129: undefined reference to `H5Tcommit1' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `create_group': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2197: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2197: undefined reference to `H5P_CLS_GROUP_CREATE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2197: undefined reference to `H5Pcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2199: undefined reference to `H5Pset_link_creation_order' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2201: undefined reference to `H5Pset_attr_creation_order' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2203: undefined reference to `H5Gcreate2' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2206: undefined reference to `H5Pclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2218: undefined reference to `H5Pclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2220: undefined reference to `H5Gclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `write_nc3_strict_att': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2150: undefined reference to `H5Aget_num_attrs' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2156: undefined reference to `H5Aget_name' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2154: undefined reference to `H5Aopen_idx' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2179: undefined reference to `H5Aclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2177: undefined reference to `H5Sclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `commit_type': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2055: undefined reference to `H5Tcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2071: undefined reference to `H5Tarray_create1' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2079: undefined reference to `H5Tinsert' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2082: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2100: undefined reference to `H5Tcreate' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `create_group': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2212: undefined reference to `H5Gopen2' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `var_exists': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2315: undefined reference to `H5Gget_num_objs' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2319: undefined reference to `H5Oget_info_by_idx' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2322: undefined reference to `H5Lget_name_by_idx' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2326: undefined reference to `H5Lget_name_by_idx' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `attach_dimscales': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2263: undefined reference to `H5DSattach_scale' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `write_dim': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2579: undefined reference to `H5Dextend' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2589: undefined reference to `H5Gmove2' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `write_nc3_strict_att': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2168: undefined reference to `H5Screate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2170: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2170: undefined reference to `H5T_NATIVE_INT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2170: undefined reference to `H5Acreate1' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2173: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2173: undefined reference to `H5T_NATIVE_INT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2173: undefined reference to `H5Awrite' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2160: undefined reference to `H5Aclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `write_var': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2399: undefined reference to `H5Dclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2425: undefined reference to `H5Dclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2429: undefined reference to `H5Gunlink' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `var_create_dataset': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1359: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1359: undefined reference to `H5P_CLS_DATASET_CREATE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1359: undefined reference to `H5Pcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1560: undefined reference to `H5Pclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1562: undefined reference to `H5Sclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `write_dim': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2491: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2491: undefined reference to `H5P_CLS_DATASET_CREATE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2491: undefined reference to `H5Pcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2498: undefined reference to `H5Pset_chunk' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2503: undefined reference to `H5Screate_simple' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2512: undefined reference to `H5Pset_attr_creation_order' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2518: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2518: undefined reference to `H5T_IEEE_F32BE_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2518: undefined reference to `H5Dcreate1' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2523: undefined reference to `H5Sclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2525: undefined reference to `H5Pclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2532: undefined reference to `H5DSset_scale' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `rec_detach_scales': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:107: undefined reference to `H5DSdetach_scale' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `var_create_dataset': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1378: undefined reference to `H5Pset_fill_value' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1506: undefined reference to `H5Pset_chunk' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1511: undefined reference to `H5Screate_simple' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1521: undefined reference to `H5Pset_attr_creation_order' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1528: undefined reference to `H5Dcreate1' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1539: undefined reference to `H5DSset_scale' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1468: undefined reference to `H5Pset_layout' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `write_coord_dimids': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1330: undefined reference to `H5Screate_simple' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1331: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1331: undefined reference to `H5T_NATIVE_INT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1331: undefined reference to `H5Acreate1' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1333: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1333: undefined reference to `H5T_NATIVE_INT_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1333: undefined reference to `H5Awrite' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1336: undefined reference to `H5Sclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1337: undefined reference to `H5Aclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `var_create_dataset': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1406: undefined reference to `H5Pset_fletcher32' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1516: undefined reference to `H5Screate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1401: undefined reference to `H5Pset_deflate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1396: undefined reference to `H5Pset_shuffle' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `write_var': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:2416: undefined reference to `H5DSdetach_scale' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `var_create_dataset': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1384: undefined reference to `H5Pset_fill_value' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_get_vara': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1162: undefined reference to `H5Sclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1164: undefined reference to `H5Sclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1166: undefined reference to `H5Pclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1160: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:921: undefined reference to `H5Dget_space' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:927: undefined reference to `H5Sget_simple_extent_dims' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1003: undefined reference to `H5Sget_simple_extent_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1005: undefined reference to `H5Screate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1011: undefined reference to `H5Sselect_hyperslab' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1016: undefined reference to `H5Screate_simple' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1056: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1056: undefined reference to `H5P_CLS_DATASET_XFER_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1056: undefined reference to `H5Pcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1077: undefined reference to `H5Tget_native_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1079: undefined reference to `H5Dread' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:1104: undefined reference to `H5Tclose' /usr/local/netcdf-4.0_gcc/lib/libnetcdf.a(nc4hdf.o): In function `nc4_put_vara': /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:846: undefined reference to `H5Sclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:848: undefined reference to `H5Sclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:844: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:634: undefined reference to `H5Dget_space' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:640: undefined reference to `H5Sget_simple_extent_dims' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:676: undefined reference to `H5Sget_simple_extent_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:678: undefined reference to `H5Screate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:684: undefined reference to `H5Sselect_hyperslab' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:690: undefined reference to `H5Screate_simple' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:735: undefined reference to `H5open' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:735: undefined reference to `H5P_CLS_DATASET_XFER_g' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:735: undefined reference to `H5Pcreate' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:819: undefined reference to `H5Tget_native_type' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:821: undefined reference to `H5Dwrite' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:823: undefined reference to `H5Tclose' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:792: undefined reference to `H5Dextend' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:794: undefined reference to `H5Dget_space' /usr/local/tools/netcdf-4.0.1/libsrc4/nc4hdf.c:796: undefined reference to `H5Sselect_hyperslab'

Thanks!

brick
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• References:
  • [netcdfgroup] Met compile error with netcdf 4.0.1
    • From: brick