Two things:
1. your configure needs to specify the --with-hdf5=...
and --with-zlib=... and with --with-hdf4=...
2. You are correct about the -lmfhdf, it should have been added
by the --enable-hdf4, but wasn't; my error.
Should be fixed in tonights snapshot.
=Dennis Heimbigner
Orion Poplawski wrote:
make[3]: Entering directory
`/builddir/build/BUILD/netcdf-4.1-beta2-snapshot2009092800/ncdap_test'
depbase=`echo test_varm3.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../ncdump
-I../libsrc4 -I/usr/include/hdf -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -MT test_varm3.o -MD -MP
-MF $depbase.Tpo -c -o test_varm3.o test_varm3.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ../libtool --tag=CC --mode=link cc -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -L../libsrc4
-L/usr/lib64/hdf -o test_varm3 test_varm3.o ../libsrc4/libnetcdf.la
-lhdf5_hl -lhdf5
libtool: link: cc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
-mtune=generic -o .libs/test_varm3 test_varm3.o
-L/builddir/build/BUILD/netcdf-4.1-beta2-snapshot2009092800/libsrc4
-L/usr/lib64/hdf ../libsrc4/.libs/libnetcdf.so -L/usr/lib -L/lib -lcurl
-lhdf5_hl -lhdf5 -Wl,-rpath -Wl,/usr/lib64
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDend'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDfileinfo'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDdiminfo'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDgetfillvalue'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDgetinfo'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDselect'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDgetdimid'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDstart'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDreaddata'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDreadattr'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDattrinfo'
collect2: ld returned 1 exit status
Configure args are:
+ ./configure --build=x86_64-redhat-linux-gnu
--host=x86_64-redhat-linux-gnu --target=x86_64-redhat-linux-gnu
--program-prefix= --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin
--sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share
--includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec
--localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man
--infodir=/usr/share/info CPPFLAGS=-I/usr/include/hdf
LDFLAGS=-L/usr/lib64/hdf --enable-shared --enable-netcdf-4 --enable-dap
--enable-hdf4 --enable-ncgen4 --enable-extra-example-tests
--enable-valgrind-tests --with-libcf
Presumably this shouldn't be compiled in this configuration? Or hdf
needs to be compiled differently? Or this needs to be linked to
-lmfhdf? Or?
Thanks!
