I'm getting an HDF error when I run a python program that interfaces
with the 4.1.2-rc1 C lib. I wrote an equivalent C program, but I can't
get it to trigger the error. With nc_set_log_level(5), here's the
logging info I get when running the python program:
jeff-whitakers-imac-6:python jsw$ python netcdf4_yc_bug.py
nc4_create_file: path test.nc cmode 0x1000 comm 0 info 0
HDF5 error messages have been turned off.
cmode after applying default format: 0x1000
nc4_create_file: path test.nc mode 0x1000
grp_list_add: new_nc_grpid 0 name /
nc4_create_file: set HDF raw chunk
cache to size 4194304 nelems 1009 preemption 0.750000
nc_inq_format: ncid 0x10000
nc_inq_typeids: ncid 0x10000
nc_inq: ncid 0x10000
nc_inq: ncid 0x10000
nc_inq_grps: ncid 0x10000
nc_def_dim: ncid 0x10000 name xc len 134
nc_def_var: ncid 0x10000 name var1 xtype 5 ndims 1
nc_def_var_nc4: name var1 type 5 ndims 1
dimid[0] 0
nc4_get_typelen_mem xtype: 5
allocating array of 1 size_t to hold
chunksizes for var var1
d = 0 max_dim 0 max_len 134 num_values
134.000000
nc_def_var_nc4: name var1 dim 0
DEFAULT_CHUNK_SIZE 4194304 num_values 134.000000 type_size 4 chunksize 134
total_chunk_size 536.000000
nc4_get_typelen_mem xtype: 5
new varid 0
nc_inq_unlimdims: ncid 0x10000
nc_inq_var_all: ncid 0x10000 varid 0
nc_def_var: ncid 0x10000 name var2 xtype 5 ndims 1
nc_def_var_nc4: name var2 type 5 ndims 1
dimid[0] 0
nc4_get_typelen_mem xtype: 5
allocating array of 1 size_t to hold
chunksizes for var var2
d = 0 max_dim 0 max_len 134 num_values
134.000000
nc_def_var_nc4: name var2 dim 0
DEFAULT_CHUNK_SIZE 4194304 num_values 134.000000 type_size 4 chunksize 134
total_chunk_size 536.000000
nc4_get_typelen_mem xtype: 5
new varid 1
nc_inq_unlimdims: ncid 0x10000
nc_inq_var_all: ncid 0x10000 varid 1
nc_def_var: ncid 0x10000 name xc xtype 5 ndims 1
nc_def_var_nc4: name xc type 5 ndims 1
dimid[0] 0
nc4_get_typelen_mem xtype: 5
allocating array of 1 size_t to hold
chunksizes for var xc
d = 0 max_dim 0 max_len 134 num_values
134.000000
nc_def_var_nc4: name xc dim 0
DEFAULT_CHUNK_SIZE 4194304 num_values 134.000000 type_size 4 chunksize 134
total_chunk_size 536.000000
nc4_get_typelen_mem xtype: 5
new varid 2
nc_inq_unlimdims: ncid 0x10000
nc_inq_var_all: ncid 0x10000 varid 2
nc_close: ncid 0x10000
close_netcdf4_file: h5->path test.nc abort 0
sync_netcdf4_file
*** NetCDF-4 Internal Metadata: int_ncid 0x10000
ext_ncid 0x10000
FILE - hdfid: 0x1000000 path: test.nc cmode: 0x1009
parallel: 0 redef: 0 fill_mode: 0 no_write: 0 next_nc_grpid: 1
GROUP - / nc_grpid: 0 nvars: 3 natts: 0
DIMENSION - dimid: 0 name: xc len: 134 unlimited: 0
VARIABLE - varid: 2 name: xc type: 5 ndims: 1
dimscale: 1 dimids: 0
VARIABLE - varid: 1 name: var2 type: 5 ndims: 1
dimscale: 0 dimids: 0
VARIABLE - varid: 0 name: var1 type: 5 ndims: 1
dimscale: 0 dimids: 0
nc4_rec_write_types: grp->name /
nc4_rec_write_metadata: grp->name /
checking var1 for out of order
coord var
checking var2 for out of order
coord var
checking xc for out of order
coord var
write_var: writing var var1
var_create_dataset: name var1
nc4_get_typelen_mem xtype: 5
var_create_dataset: about to H5Dcreate
dataset var1 of type 0x300002a
write_var: writing var var2
var_create_dataset: name var2
nc4_get_typelen_mem xtype: 5
var_create_dataset: about to H5Dcreate
dataset var2 of type 0x300002a
write_var: writing var xc
var_create_dataset: name xc
nc4_get_typelen_mem xtype: 5
var_create_dataset: about to H5Dcreate
dataset xc of type 0x300002a
ERROR: file nc4hdf.c, line 1449.
NetCDF: HDF error
Any idea what might be going on here?
-Jeff
