[netcdfgroup] Can't find or link to the hdf5 library

To: netcdfgroup@xxxxxxxxxxxxxxxx
Subject: [netcdfgroup] Can't find or link to the hdf5 library
From: Chad Herman <chad.herman.us@xxxxxxxxx>
Date: Wed, 04 May 2011 01:01:27 -0400

I'm running into a build problem with netCDF 4.1.2. I invoked configureas follows:

./configure --prefix=/usr/local/netcdf-4.1.2--with-hdf5=/usr/local/hdf5-1.8.6 --with-zlib=/usr/local/zlib-1.2.5--with-szlib=/usr/local/szip-2.1 --disable-cxx --enable-separate-fortran--disable-dap --disable-shared


Here's the relevant output:

checking whether we should try to build netCDF-4... yes
checking for deflate in -lz... yes
checking for H5Fflush in -lhdf5... no

configure: error: Can't find or link to the hdf5 library. Configure with--with-hdf5, or use --disable-netcdf-4, or see config.log for errors.

I've built netCDF4 with the HDF5 enhancements many times and while I raninto errors that I could fix, I've never run into this error. Attachedis config.log.


-Chad

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by netCDF configure 4.1.2, which was
generated by GNU Autoconf 2.68.  Invocation command line was

  $ ./configure --prefix=/usr/local/netcdf-4.1.2 
--with-hdf5=/usr/local/hdf5-1.8.6 --with-zlib=/usr/local/zlib-1.2.5 
--with-szlib=/usr/local/szip-2.1 --disable-cxx --enable-separate-fortran 
--disable-dap --disable-shared

## --------- ##
## Platform. ##
## --------- ##

hostname = ubuntu
uname -m = x86_64
uname -r = 2.6.35-28-generic
uname -s = Linux
uname -v = #50-Ubuntu SMP Fri Mar 18 18:42:20 UTC 2011

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/X11R6/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:3149: netCDF 4.1.2
configure:3189: checking build system type
configure:3203: result: x86_64-unknown-linux-gnu
configure:3223: checking host system type
configure:3236: result: x86_64-unknown-linux-gnu
configure:3258: checking target system type
configure:3271: result: x86_64-unknown-linux-gnu
configure:3322: checking for a BSD-compatible install
configure:3390: result: /usr/bin/install -c
configure:3401: checking whether build environment is sane
configure:3451: result: yes
configure:3592: checking for a thread-safe mkdir -p
configure:3631: result: /bin/mkdir -p
configure:3644: checking for gawk
configure:3660: found /usr/bin/gawk
configure:3671: result: gawk
configure:3682: checking whether make sets $(MAKE)
configure:3704: result: yes
configure:3788: checking user options
configure:3798: checking whether CXX is set to ''
configure:3802: result: no
configure:3806: checking whether FC is set to ''
configure:3810: result: no
configure:3814: checking whether F90 is set to ''
configure:3818: result: no
configure:3822: checking whether a NCIO_MINBLOCKSIZE was specified
configure:3832: result: 256
configure:3840: checking whether udunits is to be built
configure:3849: result: no
configure:3852: checking if fsync support is enabled
configure:3860: result: yes
configure:3869: checking whether extra valgrind tests should be run
configure:3877: result: no
configure:3900: checking whether libcf is to be built
configure:3909: result: no
configure:3921: checking whether a location for the HDF4 library was specified
configure:3929: result: 
configure:3935: checking whether reading of HDF4 SD files is to be enabled
configure:3937: result: no
configure:3941: checking whether to fetch some sample HDF4 files from Unidata 
ftp site to test HDF4 reading (requires wget)
configure:3954: result: no
configure:3958: checking whether parallel I/O for classic and 64-bit offset 
files using parallel-netcdf is to be enabled
configure:3966: result: no
configure:3970: checking whether a location for the parallel-netcdf library was 
specified
configure:3979: result: no
configure:3990: checking whether new netCDF-4 C++ API is to be built
configure:4001: result: no
configure:4008: checking whether extra example tests should be run
configure:4016: result: no
configure:4020: checking whether parallel IO tests should be run
configure:4028: result: no
configure:4032: checking whether a location for the HDF5 library was specified
configure:4040: result: /usr/local/hdf5-1.8.6
configure:4046: checking whether a location for the ZLIB library was specified
configure:4054: result: /usr/local/zlib-1.2.5
configure:4060: checking whether a location for the SZLIB library was specified
configure:4068: result: /usr/local/szip-2.1
configure:4074: checking whether a default chunk size in bytes was specified
configure:4084: result: 4194304
configure:4093: checking whether a maximum per-variable cache size for HDF5 was 
specified
configure:4103: result: 67108864
configure:4112: checking whether a number of chunks for the default 
per-variable cache was specified
configure:4122: result: 10
configure:4131: checking whether a default file cache size for HDF5 was 
specified
configure:4141: result: 4194304
configure:4150: checking whether a default file cache maximum number of 
elements for HDF5 was specified
configure:4160: result: 1009
configure:4169: checking whether a default cache preemption for HDF5 was 
specified
configure:4179: result: 0.75
configure:4188: checking whether netCDF-4 logging is enabled
configure:4196: result: no
configure:4200: checking whether cdmremote client is to be built
configure:4210: result: no
configure:4227: checking whether DAP client is to be built
configure:4235: result: no
configure:4254: checking whether a path for curl-config was specified
configure:4257: result: no
configure:4265: checking whether a location for curl installation was specified
configure:4274: result: no
configure:4383: checking whether dap remote testing should be enabled (default 
on)
configure:4394: result: no
configure:4419: checking whether the time-consuming dap tests should be enabled 
(default off)
configure:4430: result: no
configure:4443: checking whether netCDF extra tests should be run (developers 
only)
configure:4451: result: no
configure:4468: checking whether Fortran compiler(s) should be tested during 
configure
configure:4476: result: yes
configure:4480: checking whether FFIO will be used
configure:4488: result: no
configure:4504: checking whether to skip C++, F77, or F90 APIs if compiler is 
broken
configure:4512: result: yes
configure:4516: checking whether only the C library is desired
configure:4524: result: no
configure:4543: checking whether examples should be built
configure:4551: result: yes
configure:4563: checking whether F77 API is desired
configure:4572: result: yes
configure:4577: checking whether any Fortran API is desired
configure:4585: result: yes
configure:4590: checking whether F90 API is desired
configure:4600: result: yes
configure:4604: checking whether fortran type sizes should be checked
configure:4612: result: yes
configure:4618: checking whether C API is desired
configure:4626: result: yes
configure:4633: checking where to get netCDF C-only library for separate 
fortran libraries
configure:4649: result: 
configure:4661: checking whether CXX API is desired
configure:4670: result: no
configure:4679: checking whether v2 netCDF API should be built
configure:4687: result: yes
configure:4706: checking whether the ncgen/ncdump/nccopy should be built
configure:4715: result: yes
configure:4727: checking whether large file (> 2GB) tests should be run
configure:4735: result: no
configure:4752: checking whether benchmaks should be run (experimental)
configure:4760: result: no
configure:4772: checking whether extreme numbers should be used in tests
configure:4787: result: yes
configure:4799: checking where to put large temp files if large file tests are 
run
configure:4808: result: .
configure:4819: checking whether a win32 DLL is desired
configure:4827: result: no
configure:4849: checking whether separate fortran libs are desired
configure:4857: result: yes
configure:4892: finding C compiler
configure:4949: checking for xlc
configure:4979: result: no
configure:4949: checking for cc
configure:4965: found /usr/bin/cc
configure:4976: result: cc
configure:5007: checking for C compiler version
configure:5016: cc --version >&5
cc (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:5027: $? = 0
configure:5016: cc -v >&5
Using built-in specs.
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 
4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs 
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr 
--program-suffix=-4.4 --enable-shared --enable-multiarch 
--enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib 
--without-included-gettext --enable-threads=posix 
--with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls 
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc 
--disable-werror --with-arch-32=i686 --with-tune=generic 
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu 
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) 
configure:5027: $? = 0
configure:5016: cc -V >&5
cc: '-V' option must have argument
configure:5027: $? = 1
configure:5016: cc -qversion >&5
cc: unrecognized option '-qversion'
cc: no input files
configure:5027: $? = 1
configure:5047: checking whether the C compiler works
configure:5069: cc  -fPIC  conftest.c  >&5
configure:5073: $? = 0
configure:5121: result: yes
configure:5124: checking for C compiler default output file name
configure:5126: result: a.out
configure:5132: checking for suffix of executables
configure:5139: cc -o conftest  -fPIC  conftest.c  >&5
configure:5143: $? = 0
configure:5165: result: 
configure:5187: checking whether we are cross compiling
configure:5195: cc -o conftest  -fPIC  conftest.c  >&5
configure:5199: $? = 0
configure:5206: ./conftest
configure:5210: $? = 0
configure:5225: result: no
configure:5230: checking for suffix of object files
configure:5252: cc -c  -fPIC conftest.c >&5
configure:5256: $? = 0
configure:5277: result: o
configure:5281: checking whether we are using the GNU C compiler
configure:5300: cc -c  -fPIC conftest.c >&5
configure:5300: $? = 0
configure:5309: result: yes
configure:5318: checking whether cc accepts -g
configure:5338: cc -c -g -fPIC conftest.c >&5
configure:5338: $? = 0
configure:5379: result: yes
configure:5396: checking for cc option to accept ISO C89
configure:5460: cc  -c -g -O2 -fPIC conftest.c >&5
configure:5460: $? = 0
configure:5473: result: none needed
configure:5504: checking for style of include used by make
configure:5532: result: GNU
configure:5557: checking dependency style of cc
configure:5667: result: gcc3
configure:5686: checking whether cc understands -c and -o together
configure:5714: cc -c conftest.c -o conftest2.o >&5
configure:5718: $? = 0
configure:5724: cc -c conftest.c -o conftest2.o >&5
configure:5728: $? = 0
configure:5783: result: yes
configure:5809: checking for an ANSI C-conforming const
configure:5874: cc -c -g -O2 -fPIC conftest.c >&5
configure:5874: $? = 0
configure:5881: result: yes
configure:5906: cc -c  -fPIC conftest.c >&5
conftest.c:21: fatal error: curl/curl.h: No such file or directory
compilation terminated.
configure:5906: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include "curl/curl.h"
| int
| main ()
| {
| int x = CURLOPT_KEYPASSWD;
|   ;
|   return 0;
| }
configure:5912: checking whether a CURLOPT_KEYPASSWD is defined
configure:5914: result: no
configure:5943: finding Fortran compiler (will not be used if Fortran API is 
not desired)
configure:6223: checking for xlf90
configure:6253: result: no
configure:6223: checking for fort
configure:6253: result: no
configure:6223: checking for xlf95
configure:6253: result: no
configure:6223: checking for ifort
configure:6253: result: no
configure:6223: checking for ifc
configure:6253: result: no
configure:6223: checking for efc
configure:6253: result: no
configure:6223: checking for pgf95
configure:6253: result: no
configure:6223: checking for lf95
configure:6253: result: no
configure:6223: checking for g95
configure:6253: result: no
configure:6223: checking for gfortran
configure:6239: found /usr/bin/gfortran
configure:6250: result: gfortran
configure:6276: checking for Fortran compiler version
configure:6285: gfortran --version >&5
GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
Copyright (C) 2010 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:6296: $? = 0
configure:6285: gfortran -v >&5
Using built-in specs.
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 
4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs 
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr 
--program-suffix=-4.4 --enable-shared --enable-multiarch 
--enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib 
--without-included-gettext --enable-threads=posix 
--with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls 
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc 
--disable-werror --with-arch-32=i686 --with-tune=generic 
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu 
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) 
configure:6296: $? = 0
configure:6285: gfortran -V >&5
gfortran: '-V' option must have argument
configure:6296: $? = 1
configure:6285: gfortran -qversion >&5
gfortran: unrecognized option '-qversion'
gfortran: no input files
configure:6296: $? = 1
configure:6305: checking whether we are using the GNU Fortran compiler
configure:6318: gfortran -c   conftest.F >&5
configure:6318: $? = 0
configure:6327: result: yes
configure:6333: checking whether gfortran accepts -g
configure:6344: gfortran -c -g  conftest.f >&5
configure:6344: $? = 0
configure:6352: result: yes
configure:6443: checking for xlf
configure:6473: result: no
configure:6443: checking for fort
configure:6473: result: no
configure:6443: checking for xlf95
configure:6473: result: no
configure:6443: checking for ifort
configure:6473: result: no
configure:6443: checking for ifc
configure:6473: result: no
configure:6443: checking for efc
configure:6473: result: no
configure:6443: checking for pgf77
configure:6473: result: no
configure:6443: checking for lf95
configure:6473: result: no
configure:6443: checking for g95
configure:6473: result: no
configure:6443: checking for gfortran
configure:6459: found /usr/bin/gfortran
configure:6470: result: gfortran
configure:6496: checking for Fortran 77 compiler version
configure:6505: gfortran --version >&5
GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
Copyright (C) 2010 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:6516: $? = 0
configure:6505: gfortran -v >&5
Using built-in specs.
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 
4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs 
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr 
--program-suffix=-4.4 --enable-shared --enable-multiarch 
--enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib 
--without-included-gettext --enable-threads=posix 
--with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls 
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc 
--disable-werror --with-arch-32=i686 --with-tune=generic 
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu 
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) 
configure:6516: $? = 0
configure:6505: gfortran -V >&5
gfortran: '-V' option must have argument
configure:6516: $? = 1
configure:6505: gfortran -qversion >&5
gfortran: unrecognized option '-qversion'
gfortran: no input files
configure:6516: $? = 1
configure:6525: checking whether we are using the GNU Fortran 77 compiler
configure:6538: gfortran -c  conftest.F >&5
configure:6538: $? = 0
configure:6547: result: yes
configure:6553: checking whether gfortran accepts -g
configure:6564: gfortran -c -g conftest.f >&5
configure:6564: $? = 0
configure:6572: result: yes
configure:6618: setting up Fortran 90
configure:6637: checking for Fortran flag to compile .f90 files
configure:6653: gfortran -c -g -O2  conftest.f90 >&5
configure:6653: $? = 0
configure:6662: result: none
configure:6690: checking fortran 90 modules inclusion flag
configure:6715: gfortran -c -g -O2  conftest.f90 >&5
configure:6715: $? = 0
configure:6732: gfortran -c -g -O2 -Itmpdir_0  conftest.f90 >&5
configure:6732: $? = 0
configure:6751: result: -I
configure:6763: checking if Fortran compiler can handle Fortran-90
configure:6771: gfortran  -g -O2  conftest.f90
configure:6774: $? = 0
configure:6786: result: yes
configure:6795: finding C++ compiler (will not be used if C++ API is not 
desired)
configure:6863: checking for cl
configure:6893: result: no
configure:6863: checking for KCC
configure:6893: result: no
configure:6863: checking for CC
configure:6893: result: no
configure:6863: checking for cxx
configure:6893: result: no
configure:6863: checking for cc++
configure:6893: result: no
configure:6863: checking for xlC
configure:6893: result: no
configure:6863: checking for aCC
configure:6893: result: no
configure:6863: checking for c++
configure:6879: found /usr/bin/c++
configure:6890: result: c++
configure:6917: checking for C++ compiler version
configure:6926: c++ --version >&5
c++ (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6937: $? = 0
configure:6926: c++ -v >&5
Using built-in specs.
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 
4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs 
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr 
--program-suffix=-4.4 --enable-shared --enable-multiarch 
--enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib 
--without-included-gettext --enable-threads=posix 
--with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls 
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc 
--disable-werror --with-arch-32=i686 --with-tune=generic 
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu 
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) 
configure:6937: $? = 0
configure:6926: c++ -V >&5
c++: '-V' option must have argument
configure:6937: $? = 1
configure:6926: c++ -qversion >&5
c++: unrecognized option '-qversion'
c++: no input files
configure:6937: $? = 1
configure:6941: checking whether we are using the GNU C++ compiler
configure:6960: c++ -c  -fPIC conftest.cpp >&5
configure:6960: $? = 0
configure:6969: result: yes
configure:6978: checking whether c++ accepts -g
configure:6998: c++ -c -g -fPIC conftest.cpp >&5
configure:6998: $? = 0
configure:7039: result: yes
configure:7064: checking dependency style of c++
configure:7174: result: gcc3
configure:7245: setting up libtool
configure:7294: checking how to print strings
configure:7321: result: printf
configure:7342: checking for a sed that does not truncate output
configure:7406: result: /bin/sed
configure:7424: checking for grep that handles long lines and -e
configure:7482: result: /bin/grep
configure:7487: checking for egrep
configure:7549: result: /bin/grep -E
configure:7554: checking for fgrep
configure:7616: result: /bin/grep -F
configure:7651: checking for ld used by cc
configure:7718: result: /usr/bin/ld
configure:7725: checking if the linker (/usr/bin/ld) is GNU ld
configure:7740: result: yes
configure:7752: checking for BSD- or MS-compatible name lister (nm)
configure:7801: result: /usr/bin/nm -B
configure:7931: checking the name lister (/usr/bin/nm -B) interface
configure:7938: cc -c -g -O2 -fPIC conftest.c >&5
configure:7941: /usr/bin/nm -B "conftest.o"
configure:7944: output
0000000000000000 B some_variable
configure:7951: result: BSD nm
configure:7954: checking whether ln -s works
configure:7958: result: yes
configure:7966: checking the maximum length of command line arguments
configure:8091: result: 1572864
configure:8108: checking whether the shell understands some XSI constructs
configure:8118: result: yes
configure:8122: checking whether the shell understands "+="
configure:8128: result: yes
configure:8163: checking how to convert x86_64-unknown-linux-gnu file names to 
x86_64-unknown-linux-gnu format
configure:8203: result: func_convert_file_noop
configure:8210: checking how to convert x86_64-unknown-linux-gnu file names to 
toolchain format
configure:8230: result: func_convert_file_noop
configure:8237: checking for /usr/bin/ld option to reload object files
configure:8244: result: -r
configure:8318: checking for objdump
configure:8334: found /usr/bin/objdump
configure:8345: result: objdump
configure:8374: checking how to recognize dependent libraries
configure:8576: result: pass_all
configure:8661: checking for dlltool
configure:8691: result: no
configure:8718: checking how to associate runtime and link libraries
configure:8745: result: printf %s\n
configure:8805: checking for ar
configure:8821: found /usr/bin/ar
configure:8832: result: ar
configure:8869: checking for archiver @FILE support
configure:8886: cc -c -g -O2 -fPIC conftest.c >&5
configure:8886: $? = 0
configure:8889: ar cru libconftest.a @conftest.lst >&5
configure:8892: $? = 0
configure:8897: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:8900: $? = 1
configure:8912: result: @
configure:8970: checking for strip
configure:8986: found /usr/bin/strip
configure:8997: result: strip
configure:9069: checking for ranlib
configure:9085: found /usr/bin/ranlib
configure:9096: result: ranlib
configure:9198: checking command to parse /usr/bin/nm -B output from cc object
configure:9317: cc -c -g -O2 -fPIC conftest.c >&5
configure:9320: $? = 0
configure:9324: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ 
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | 
sed '/ __gnu_lto/d' \> conftest.nm
configure:9327: $? = 0
configure:9393: cc -o conftest -g -O2 -fPIC  conftest.c conftstm.o >&5
configure:9396: $? = 0
configure:9434: result: ok
configure:9471: checking for sysroot
configure:9501: result: no
configure:9578: cc -c -g -O2 -fPIC conftest.c >&5
configure:9581: $? = 0
configure:9744: checking for mt
configure:9760: found /bin/mt
configure:9771: result: mt
configure:9794: checking if mt is a manifest tool
configure:9800: mt '-?'
configure:9808: result: no
configure:10440: checking how to run the C preprocessor
configure:10471: cc -E -fPIC conftest.c
configure:10471: $? = 0
configure:10485: cc -E -fPIC conftest.c
conftest.c:21: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:10485: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:10510: result: cc -E
configure:10530: cc -E -fPIC conftest.c
configure:10530: $? = 0
configure:10544: cc -E -fPIC conftest.c
conftest.c:21: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:10544: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:10573: checking for ANSI C header files
configure:10593: cc -c -g -O2 -fPIC conftest.c >&5
configure:10593: $? = 0
configure:10666: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:10666: $? = 0
configure:10666: ./conftest
configure:10666: $? = 0
configure:10677: result: yes
configure:10690: checking for sys/types.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10690: checking for sys/stat.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10690: checking for stdlib.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10690: checking for string.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10690: checking for memory.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10690: checking for strings.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10690: checking for inttypes.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10690: checking for stdint.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10690: checking for unistd.h
configure:10690: cc -c -g -O2 -fPIC conftest.c >&5
configure:10690: $? = 0
configure:10690: result: yes
configure:10704: checking for dlfcn.h
configure:10704: cc -c -g -O2 -fPIC conftest.c >&5
configure:10704: $? = 0
configure:10704: result: yes
configure:11201: checking for objdir
configure:11216: result: .libs
configure:11487: checking if cc supports -fno-rtti -fno-exceptions
configure:11505: cc -c -g -O2 -fPIC -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not 
for C
configure:11509: $? = 0
configure:11522: result: no
configure:11832: checking for cc option to produce PIC
configure:11839: result: -fPIC -DPIC
configure:11847: checking if cc PIC flag -fPIC -DPIC works
configure:11865: cc -c -g -O2 -fPIC -fPIC -DPIC -DPIC conftest.c >&5
configure:11869: $? = 0
configure:11882: result: yes
configure:11911: checking if cc static flag -static works
configure:11939: result: yes
configure:11954: checking if cc supports -c -o file.o
configure:11975: cc -c -g -O2 -fPIC -o out/conftest2.o conftest.c >&5
configure:11979: $? = 0
configure:12001: result: yes
configure:12009: checking if cc supports -c -o file.o
configure:12056: result: yes
configure:12089: checking whether the cc linker (/usr/bin/ld -m elf_x86_64) 
supports shared libraries
configure:13247: result: yes
configure:13492: checking dynamic linker characteristics
configure:14006: cc -o conftest -g -O2 -fPIC  -Wl,-rpath -Wl,/foo conftest.c  
>&5
configure:14006: $? = 0
configure:14228: result: GNU/Linux ld.so
configure:14335: checking how to hardcode library paths into programs
configure:14360: result: immediate
configure:14900: checking whether stripping libraries is possible
configure:14905: result: yes
configure:14940: checking if libtool supports shared libraries
configure:14942: result: yes
configure:14945: checking whether to build shared libraries
configure:14966: result: no
configure:14969: checking whether to build static libraries
configure:14973: result: yes
configure:14996: checking how to run the C++ preprocessor
configure:15023: c++ -E -fPIC conftest.cpp
configure:15023: $? = 0
configure:15037: c++ -E -fPIC conftest.cpp
conftest.cpp:33: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:15037: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:15062: result: c++ -E
configure:15082: c++ -E -fPIC conftest.cpp
configure:15082: $? = 0
configure:15096: c++ -E -fPIC conftest.cpp
conftest.cpp:33: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:15096: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:15266: checking for ld used by c++
configure:15333: result: /usr/bin/ld -m elf_x86_64
configure:15340: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:15355: result: yes
configure:15410: checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) 
supports shared libraries
configure:16414: result: yes
configure:16449: c++ -c -g -O2 -fPIC conftest.cpp >&5
configure:16452: $? = 0
configure:16972: checking for c++ option to produce PIC
configure:16979: result: -fPIC -DPIC
configure:16987: checking if c++ PIC flag -fPIC -DPIC works
configure:17005: c++ -c -g -O2 -fPIC -fPIC -DPIC -DPIC conftest.cpp >&5
configure:17009: $? = 0
configure:17022: result: yes
configure:17045: checking if c++ static flag -static works
configure:17073: result: yes
configure:17085: checking if c++ supports -c -o file.o
configure:17106: c++ -c -g -O2 -fPIC -o out/conftest2.o conftest.cpp >&5
configure:17110: $? = 0
configure:17132: result: yes
configure:17137: checking if c++ supports -c -o file.o
configure:17184: result: yes
configure:17214: checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) 
supports shared libraries
configure:17248: result: yes
configure:17391: checking dynamic linker characteristics
configure:18061: result: GNU/Linux ld.so
configure:18114: checking how to hardcode library paths into programs
configure:18139: result: immediate
configure:18288: checking if libtool supports shared libraries
configure:18290: result: yes
configure:18293: checking whether to build shared libraries
configure:18313: result: no
configure:18316: checking whether to build static libraries
configure:18320: result: yes
configure:18624: checking for gfortran option to produce PIC
configure:18631: result: -fPIC
configure:18639: checking if gfortran PIC flag -fPIC works
configure:18657: gfortran -c -g -O2 -fPIC conftest.f >&5
configure:18661: $? = 0
configure:18674: result: yes
configure:18697: checking if gfortran static flag -static works
configure:18725: result: yes
configure:18737: checking if gfortran supports -c -o file.o
configure:18758: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:18762: $? = 0
configure:18784: result: yes
configure:18789: checking if gfortran supports -c -o file.o
configure:18836: result: yes
configure:18866: checking whether the gfortran linker (/usr/bin/ld -m 
elf_x86_64) supports shared libraries
configure:19974: result: yes
configure:20117: checking dynamic linker characteristics
configure:20781: result: GNU/Linux ld.so
configure:20834: checking how to hardcode library paths into programs
configure:20859: result: immediate
configure:21004: checking if libtool supports shared libraries
configure:21006: result: yes
configure:21009: checking whether to build shared libraries
configure:21029: result: no
configure:21032: checking whether to build static libraries
configure:21036: result: yes
configure:21069: gfortran -c -g -O2  conftest.f90 >&5
configure:21072: $? = 0
configure:21484: checking for gfortran option to produce PIC
configure:21491: result: -fPIC
configure:21499: checking if gfortran PIC flag -fPIC works
configure:21517: gfortran -c -g -O2 -fPIC  conftest.f90 >&5
configure:21521: $? = 0
configure:21534: result: yes
configure:21557: checking if gfortran static flag -static works
configure:21585: result: yes
configure:21597: checking if gfortran supports -c -o file.o
configure:21618: gfortran -c -g -O2 -o out/conftest2.o  conftest.f90 >&5
configure:21622: $? = 0
configure:21644: result: yes
configure:21649: checking if gfortran supports -c -o file.o
configure:21696: result: yes
configure:21726: checking whether the gfortran linker (/usr/bin/ld -m 
elf_x86_64) supports shared libraries
configure:22834: result: yes
configure:22977: checking dynamic linker characteristics
configure:23641: result: GNU/Linux ld.so
configure:23694: checking how to hardcode library paths into programs
configure:23719: result: immediate
configure:23778: finding other utilities
configure:23784: trying to set fortran flags for this platform
configure:23833: checking for special C compiler options needed for large files
configure:23878: result: no
configure:23884: checking for _FILE_OFFSET_BITS value needed for large files
configure:23909: cc -c -g -O2 -fPIC conftest.c >&5
configure:23909: $? = 0
configure:23941: result: no
configure:24025: displaying some results
configure:24031: checking CPPFLAGS
configure:24033: result: -fPIC
configure:24035: checking CC CFLAGS
configure:24037: result: cc -g -O2
configure:24040: checking type cc
configure:24042: result: cc is /usr/bin/cc
configure:24045: checking CXX
configure:24048: result: c++
configure:24050: checking CXXFLAGS
configure:24052: result: -g -O2
configure:24055: checking type c++
configure:24057: result: c++ is /usr/bin/c++
configure:24064: checking FC
configure:24067: result: gfortran
configure:24069: checking FFLAGS
configure:24071: result: -g -O2
configure:24074: checking type gfortran
configure:24076: result: gfortran is /usr/bin/gfortran
configure:24083: checking F90
configure:24086: result: gfortran
configure:24088: checking FCFLAGS
configure:24090: result: -g -O2
configure:24093: checking type gfortran
configure:24095: result: gfortran is /usr/bin/gfortran
configure:24102: checking AR
configure:24105: result: ar
configure:24107: checking AR_FLAGS
configure:24109: result: cru
configure:24112: checking type ar
configure:24114: result: ar is /usr/bin/ar
configure:24121: checking NM
configure:24124: result: /usr/bin/nm -B
configure:24126: checking NMFLAGS
configure:24128: result: 
configure:24200: checking for /usr/bin/nm
configure:24227: result: /usr/bin/nm -B
configure:24240: checking nm flags
configure:24245: result: 
configure:24257: checking for C-equivalent to Fortran routine "SUB"
configure:24264: gfortran -c -g -O2 conftest.f
configure:24267: $? = 0
configure:24277: result: sub_
configure:24297: checking for Fortran "byte"
configure:24305: gfortran -c -g -O2 conftest.f
configure:24308: $? = 0
configure:24310: result: yes
configure:24328: checking for Fortran "integer*2"
configure:24336: gfortran -c -g -O2 conftest.f
configure:24339: $? = 0
configure:24341: result: yes
configure:24368: checking if Fortran "byte" is C "signed char"
configure:24378: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24381: $? = 0
configure:24384: gfortran -g -O2 -c conftestf.f
configure:24387: $? = 0
configure:24390: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24393: $? = 0
configure:24396: ./conftest
configure:24399: $? = 0
configure:24401: result: yes
configure:24435: checking if Fortran "byte" is C "short"
configure:24445: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24448: $? = 0
configure:24451: gfortran -g -O2 -c conftestf.f
configure:24454: $? = 0
configure:24457: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24460: $? = 0
configure:24463: ./conftest
configure:24466: $? = 1
configure:24479: result: no
configure:24502: checking if Fortran "byte" is C "int"
configure:24512: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24515: $? = 0
configure:24518: gfortran -g -O2 -c conftestf.f
configure:24521: $? = 0
configure:24524: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24527: $? = 0
configure:24530: ./conftest
configure:24533: $? = 1
configure:24546: result: no
configure:24569: checking if Fortran "byte" is C "long"
configure:24579: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24582: $? = 0
configure:24585: gfortran -g -O2 -c conftestf.f
configure:24588: $? = 0
configure:24591: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24594: $? = 0
configure:24597: ./conftest
configure:24600: $? = 1
configure:24613: result: no
configure:24640: checking if Fortran "integer*2" is C "short"
configure:24650: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24653: $? = 0
configure:24656: gfortran -g -O2 -c conftestf.f
configure:24659: $? = 0
configure:24662: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24665: $? = 0
configure:24668: ./conftest
configure:24671: $? = 0
configure:24673: result: yes
configure:24707: checking if Fortran "integer*2" is C "int"
configure:24717: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24720: $? = 0
configure:24723: gfortran -g -O2 -c conftestf.f
configure:24726: $? = 0
configure:24729: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24732: $? = 0
configure:24735: ./conftest
configure:24738: $? = 1
configure:24751: result: no
configure:24774: checking if Fortran "integer*2" is C "long"
configure:24784: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24787: $? = 0
configure:24790: gfortran -g -O2 -c conftestf.f
configure:24793: $? = 0
configure:24796: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24799: $? = 0
configure:24802: ./conftest
configure:24805: $? = 1
configure:24818: result: no
configure:24843: checking if Fortran "integer" is C "int"
configure:24853: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24856: $? = 0
configure:24859: gfortran -g -O2 -c conftestf.f
configure:24862: $? = 0
configure:24865: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24868: $? = 0
configure:24871: ./conftest
configure:24874: $? = 0
configure:24876: result: yes
configure:24910: checking if Fortran "real" is C "float"
configure:24920: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24923: $? = 0
configure:24926: gfortran -g -O2 -c conftestf.f
configure:24929: $? = 0
configure:24932: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:24935: $? = 0
configure:24938: ./conftest
configure:24941: $? = 0
configure:24943: result: yes
configure:24977: checking if Fortran "doubleprecision" is C "double"
configure:24987: cc -c -fPIC -g -O2 conftest.c
conftest.c: In function 'sub_':
conftest.c:4: warning: incompatible implicit declaration of built-in function 
'exit'
configure:24990: $? = 0
configure:24993: gfortran -g -O2 -c conftestf.f
configure:24996: $? = 0
configure:24999: gfortran -o conftest -g -O2  conftestf.o conftest.o  
configure:25002: $? = 0
configure:25005: ./conftest
configure:25008: $? = 0
configure:25010: result: yes
configure:25038: checking for Fortran-equivalent to netCDF "byte"
configure:25046: gfortran -c -g -O2 conftest.f
configure:25049: $? = 0
configure:25060: result: byte
configure:25066: checking for Fortran-equivalent to netCDF "short"
configure:25074: gfortran -c -g -O2 conftest.f
configure:25077: $? = 0
configure:25088: result: integer*2
configure:25135: checking if Fortran 90 compiler capitalizes .mod filenames
configure:25142: gfortran  conftest.f90 >&5
/usr/lib/gcc/x86_64-linux-gnu/4.4.5/libgfortranbegin.a(fmain.o): In function 
`main':
(.text+0x26): undefined reference to `MAIN__'
collect2: ld returned 1 exit status
configure:25145: $? = 1
configure:25153: result: no
configure:25174: checking types, headers, and functions
configure:25177: checking for stdlib.h
configure:25177: result: yes
configure:25187: checking for sys/types.h
configure:25187: result: yes
configure:25199: checking locale.h usability
configure:25199: cc -c -g -O2 -fPIC conftest.c >&5
configure:25199: $? = 0
configure:25199: result: yes
configure:25199: checking locale.h presence
configure:25199: cc -E -fPIC conftest.c
configure:25199: $? = 0
configure:25199: result: yes
configure:25199: checking for locale.h
configure:25199: result: yes
configure:25212: checking for dirent.h that defines DIR
configure:25231: cc -c -g -O2 -fPIC conftest.c >&5
configure:25231: $? = 0
configure:25239: result: yes
configure:25252: checking for library containing opendir
configure:25283: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25283: $? = 0
configure:25300: result: none required
configure:25367: checking for ANSI C header files
configure:25471: result: yes
configure:25479: checking for sys/wait.h that is POSIX.1 compatible
configure:25505: cc -c -g -O2 -fPIC conftest.c >&5
configure:25505: $? = 0
configure:25512: result: yes
configure:25520: checking whether time.h and sys/time.h may both be included
configure:25540: cc -c -g -O2 -fPIC conftest.c >&5
configure:25540: $? = 0
configure:25547: result: yes
configure:25558: checking stdio.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking stdio.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for stdio.h
configure:25558: result: yes
configure:25558: checking stdarg.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking stdarg.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for stdarg.h
configure:25558: result: yes
configure:25558: checking errno.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking errno.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for errno.h
configure:25558: result: yes
configure:25558: checking ctype.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking ctype.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for ctype.h
configure:25558: result: yes
configure:25558: checking fcntl.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking fcntl.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for fcntl.h
configure:25558: result: yes
configure:25558: checking malloc.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking malloc.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for malloc.h
configure:25558: result: yes
configure:25558: checking for stdlib.h
configure:25558: result: yes
configure:25558: checking for string.h
configure:25558: result: yes
configure:25558: checking for strings.h
configure:25558: result: yes
configure:25558: checking for unistd.h
configure:25558: result: yes
configure:25558: checking for sys/stat.h
configure:25558: result: yes
configure:25558: checking getopt.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking getopt.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for getopt.h
configure:25558: result: yes
configure:25558: checking sys/time.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking sys/time.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for sys/time.h
configure:25558: result: yes
configure:25558: checking sys/resource.h usability
configure:25558: cc -c -g -O2 -fPIC conftest.c >&5
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking sys/resource.h presence
configure:25558: cc -E -fPIC conftest.c
configure:25558: $? = 0
configure:25558: result: yes
configure:25558: checking for sys/resource.h
configure:25558: result: yes
configure:25570: checking for vprintf
configure:25570: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
conftest.c:85: warning: conflicting types for built-in function 'vprintf'
configure:25570: $? = 0
configure:25570: result: yes
configure:25576: checking for _doprnt
configure:25576: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
/tmp/ccyuRvAt.o: In function `main':
/usr/local/src/netcdf-4.1.2/conftest.c:97: undefined reference to `_doprnt'
collect2: ld returned 1 exit status
configure:25576: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| /* end confdefs.h.  */
| /* Define _doprnt to an innocuous variant, in case <limits.h> declares 
_doprnt.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define _doprnt innocuous__doprnt
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char _doprnt (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef _doprnt
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char _doprnt ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub__doprnt || defined __stub____doprnt
| choke me
| #endif
| 
| int
| main ()
| {
| return _doprnt ();
|   ;
|   return 0;
| }
configure:25576: result: no
configure:25589: checking for stdbool.h that conforms to C99
configure:25656: cc -c -g -O2 -fPIC conftest.c >&5
configure:25656: $? = 0
configure:25663: result: yes
configure:25665: checking for _Bool
configure:25665: cc -c -g -O2 -fPIC conftest.c >&5
configure:25665: $? = 0
configure:25665: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:99: error: expected expression before ')' token
configure:25665: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((_Bool)))
|           return 0;
|   ;
|   return 0;
| }
configure:25665: result: yes
configure:25686: checking for strlcat
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
/tmp/ccCA5VrQ.o: In function `main':
/usr/local/src/netcdf-4.1.2/conftest.c:99: undefined reference to `strlcat'
collect2: ld returned 1 exit status
configure:25686: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| /* end confdefs.h.  */
| /* Define strlcat to an innocuous variant, in case <limits.h> declares 
strlcat.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strlcat innocuous_strlcat
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strlcat (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef strlcat
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strlcat ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strlcat || defined __stub___strlcat
| choke me
| #endif
| 
| int
| main ()
| {
| return strlcat ();
|   ;
|   return 0;
| }
configure:25686: result: no
configure:25686: checking for strerror
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25686: $? = 0
configure:25686: result: yes
configure:25686: checking for snprintf
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
conftest.c:89: warning: conflicting types for built-in function 'snprintf'
configure:25686: $? = 0
configure:25686: result: yes
configure:25686: checking for strchr
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
conftest.c:90: warning: conflicting types for built-in function 'strchr'
configure:25686: $? = 0
configure:25686: result: yes
configure:25686: checking for strrchr
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
conftest.c:91: warning: conflicting types for built-in function 'strrchr'
configure:25686: $? = 0
configure:25686: result: yes
configure:25686: checking for mktemp
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
/tmp/ccJimYhl.o: In function `main':
/usr/local/src/netcdf-4.1.2/conftest.c:103: warning: the use of `mktemp' is 
dangerous, better use `mkstemp' or `mkdtemp'
configure:25686: $? = 0
configure:25686: result: yes
configure:25686: checking for strcat
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
conftest.c:93: warning: conflicting types for built-in function 'strcat'
configure:25686: $? = 0
configure:25686: result: yes
configure:25686: checking for strcpy
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
conftest.c:94: warning: conflicting types for built-in function 'strcpy'
configure:25686: $? = 0
configure:25686: result: yes
configure:25686: checking for strdup
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
conftest.c:95: warning: conflicting types for built-in function 'strdup'
configure:25686: $? = 0
configure:25686: result: yes
configure:25686: checking for strcasecmp
configure:25686: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
conftest.c:96: warning: conflicting types for built-in function 'strcasecmp'
configure:25686: $? = 0
configure:25686: result: yes
configure:25698: checking for strtod
configure:25698: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25698: $? = 0
configure:25698: result: yes
configure:25698: checking for strtoll
configure:25698: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25698: $? = 0
configure:25698: result: yes
configure:25709: checking for getrlimit
configure:25709: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25709: $? = 0
configure:25709: result: yes
configure:25720: checking for gettimeofday
configure:25720: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25720: $? = 0
configure:25720: result: yes
configure:25731: checking for fsync
configure:25731: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25731: $? = 0
configure:25731: result: yes
configure:25742: checking for MPI_Comm_f2c
configure:25742: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
/tmp/ccPZMehx.o: In function `main':
/usr/local/src/netcdf-4.1.2/conftest.c:113: undefined reference to 
`MPI_Comm_f2c'
collect2: ld returned 1 exit status
configure:25742: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| /* end confdefs.h.  */
| /* Define MPI_Comm_f2c to an innocuous variant, in case <limits.h> declares 
MPI_Comm_f2c.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define MPI_Comm_f2c innocuous_MPI_Comm_f2c
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char MPI_Comm_f2c (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef MPI_Comm_f2c
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char MPI_Comm_f2c ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_MPI_Comm_f2c || defined __stub___MPI_Comm_f2c
| choke me
| #endif
| 
| int
| main ()
| {
| return MPI_Comm_f2c ();
|   ;
|   return 0;
| }
configure:25742: result: no
configure:25751: checking for size_t
configure:25751: cc -c -g -O2 -fPIC conftest.c >&5
configure:25751: $? = 0
configure:25751: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:115: error: expected expression before ')' token
configure:25751: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
|           return 0;
|   ;
|   return 0;
| }
configure:25751: result: yes
configure:25764: checking for working alloca.h
configure:25781: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25781: $? = 0
configure:25789: result: yes
configure:25797: checking for alloca
configure:25834: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:25834: $? = 0
configure:25842: result: yes
configure:25951: checking whether isnan is declared
configure:25951: cc -c -g -O2 -fPIC conftest.c >&5
configure:25951: $? = 0
configure:25951: result: yes
configure:25962: checking whether isinf is declared
configure:25962: cc -c -g -O2 -fPIC conftest.c >&5
configure:25962: $? = 0
configure:25962: result: yes
configure:25973: checking whether isfinite is declared
configure:25973: cc -c -g -O2 -fPIC conftest.c >&5
configure:25973: $? = 0
configure:25973: result: yes
configure:25984: checking whether signbit is declared
configure:25984: cc -c -g -O2 -fPIC conftest.c >&5
configure:25984: $? = 0
configure:25984: result: yes
configure:25998: checking for struct stat.st_blksize
configure:25998: cc -c -g -O2 -fPIC conftest.c >&5
configure:25998: $? = 0
configure:25998: result: yes
configure:26012: checking for IEEE floating point format
configure:26050: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:26050: $? = 0
configure:26050: ./conftest
configure:26050: $? = 0
configure:26059: result: yes
configure:26067: checking for size_t
configure:26067: result: yes
configure:26078: checking for off_t
configure:26078: cc -c -g -O2 -fPIC conftest.c >&5
configure:26078: $? = 0
configure:26078: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:123: error: expected expression before ')' token
configure:26078: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((off_t)))
|           return 0;
|   ;
|   return 0;
| }
configure:26078: result: yes
configure:26089: checking for ssize_t
configure:26089: cc -c -g -O2 -fPIC conftest.c >&5
configure:26089: $? = 0
configure:26089: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:123: error: expected expression before ')' token
configure:26089: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((ssize_t)))
|           return 0;
|   ;
|   return 0;
| }
configure:26089: result: yes
configure:26098: checking for ptrdiff_t
configure:26098: cc -c -g -O2 -fPIC conftest.c >&5
configure:26098: $? = 0
configure:26098: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:124: error: expected expression before ')' token
configure:26098: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((ptrdiff_t)))
|           return 0;
|   ;
|   return 0;
| }
configure:26098: result: yes
configure:26107: checking for uchar
configure:26107: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:125: error: 'uchar' undeclared (first use in this function)
conftest.c:125: error: (Each undeclared identifier is reported only once
conftest.c:125: error: for each function it appears in.)
configure:26107: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof (uchar))
|        return 0;
|   ;
|   return 0;
| }
configure:26107: result: no
configure:26116: checking for longlong
configure:26116: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:125: error: 'longlong' undeclared (first use in this function)
conftest.c:125: error: (Each undeclared identifier is reported only once
conftest.c:125: error: for each function it appears in.)
configure:26116: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof (longlong))
|        return 0;
|   ;
|   return 0;
| }
configure:26116: result: no
configure:26129: checking whether char is unsigned
configure:26147: cc -c -g -O2 -fPIC conftest.c >&5
configure:26147: $? = 0
configure:26154: result: no
configure:26161: checking whether byte ordering is bigendian
configure:26176: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c:90: error: expected '=', ',', ';', 'asm' or '__attribute__' before 
'a'
configure:26176: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #ifndef __APPLE_CC__
|              not a universal capable compiler
|            #endif
|            typedef int dummy;
| 
configure:26221: cc -c -g -O2 -fPIC conftest.c >&5
configure:26221: $? = 0
configure:26239: cc -c -g -O2 -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:96: error: 'not' undeclared (first use in this function)
conftest.c:96: error: (Each undeclared identifier is reported only once
conftest.c:96: error: for each function it appears in.)
conftest.c:96: error: expected ';' before 'big'
configure:26239: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <sys/types.h>
|               #include <sys/param.h>
| 
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
|                not big endian
|               #endif
| 
|   ;
|   return 0;
| }
configure:26367: result: no
configure:26389: checking size of short
configure:26394: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:26394: $? = 0
configure:26394: ./conftest
configure:26394: $? = 0
configure:26408: result: 2
configure:26422: checking size of int
configure:26427: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:26427: $? = 0
configure:26427: ./conftest
configure:26427: $? = 0
configure:26441: result: 4
configure:26455: checking size of long
configure:26460: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:26460: $? = 0
configure:26460: ./conftest
configure:26460: $? = 0
configure:26474: result: 8
configure:26488: checking size of float
configure:26493: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:26493: $? = 0
configure:26493: ./conftest
configure:26493: $? = 0
configure:26507: result: 4
configure:26521: checking size of double
configure:26526: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:26526: $? = 0
configure:26526: ./conftest
configure:26526: $? = 0
configure:26540: result: 8
configure:26554: checking size of off_t
configure:26559: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:26559: $? = 0
configure:26559: ./conftest
configure:26559: $? = 0
configure:26573: result: 8
configure:26587: checking size of size_t
configure:26592: cc -o conftest -g -O2 -fPIC  conftest.c  >&5
configure:26592: $? = 0
configure:26592: ./conftest
configure:26592: $? = 0
configure:26606: result: 8
configure:26705: checking for manual-page index command
configure:26707: result: 
configure:26756: checking whether we should try to build netCDF-4
configure:26758: result: yes
configure:26762: checking for deflate in -lz
configure:26787: cc -o conftest -g -O2 -fPIC -I/usr/local/zlib-1.2.5/include 
-I/usr/local/hdf5-1.8.6/include -I/usr/local/szip-2.1/include  
-L/usr/local/zlib-1.2.5/lib -L/usr/local/hdf5-1.8.6/lib 
-L/usr/local/szip-2.1/lib conftest.c -lz   >&5
configure:26787: $? = 0
configure:26796: result: yes
configure:26822: checking for H5Fflush in -lhdf5
configure:26847: cc -o conftest -g -O2 -fPIC -I/usr/local/zlib-1.2.5/include 
-I/usr/local/hdf5-1.8.6/include -I/usr/local/szip-2.1/include  
-L/usr/local/zlib-1.2.5/lib -L/usr/local/hdf5-1.8.6/lib 
-L/usr/local/szip-2.1/lib conftest.c -lhdf5  -lz  >&5
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Tconv.o): In function `H5T_conv_s_s':
H5Tconv.c:(.text+0x6ec20): undefined reference to `ceil'
H5Tconv.c:(.text+0x6ec78): undefined reference to `ceil'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Tconv.o): In function `H5T_conv_i_f':
H5Tconv.c:(.text+0x732b2): undefined reference to `pow'
H5Tconv.c:(.text+0x73a7e): undefined reference to `ceil'
H5Tconv.c:(.text+0x73b17): undefined reference to `ceil'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Tconv.o): In function `H5T_conv_b_b':
H5Tconv.c:(.text+0x74450): undefined reference to `ceil'
H5Tconv.c:(.text+0x745e9): undefined reference to `ceil'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Tconv.o): In function `H5T_conv_i_i':
H5Tconv.c:(.text+0x75984): undefined reference to `ceil'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Tconv.o):H5Tconv.c:(.text+0x75b33): more 
undefined references to `ceil' follow
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Tconv.o): In function `H5T_conv_f_i':
H5Tconv.c:(.text+0x78315): undefined reference to `pow'
H5Tconv.c:(.text+0x79654): undefined reference to `ceil'
H5Tconv.c:(.text+0x797de): undefined reference to `ceil'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Z.o): In function `H5Z_init_interface':
H5Z.c:(.text+0x27d): undefined reference to `SZ_encoder_enabled'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zdeflate.o): In function 
`H5Z_filter_deflate':
H5Zdeflate.c:(.text+0xf3): undefined reference to `ceil'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zszip.o): In function `H5Z_filter_szip':
H5Zszip.c:(.text+0x134): undefined reference to `SZ_BufftoBuffDecompress'
H5Zszip.c:(.text+0x1d1): undefined reference to `SZ_BufftoBuffCompress'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zscaleoffset.o): In function 
`H5Z_scaleoffset_rnd':
H5Zscaleoffset.c:(.text+0x1ce): undefined reference to `ceil'
H5Zscaleoffset.c:(.text+0x1e6): undefined reference to `floor'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zscaleoffset.o): In function 
`H5Z_scaleoffset_postdecompress_fd':
H5Zscaleoffset.c:(.text+0x116c): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x120b): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x12af): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x132f): undefined reference to `pow'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zscaleoffset.o): In function 
`H5Z_filter_scaleoffset':
H5Zscaleoffset.c:(.text+0x5cf8): undefined reference to `pow'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zscaleoffset.o):H5Zscaleoffset.c:(.text+0x5d16):
 more undefined references to `pow' follow
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zscaleoffset.o): In function 
`H5Z_filter_scaleoffset':
H5Zscaleoffset.c:(.text+0x5d3f): undefined reference to `ceil'
H5Zscaleoffset.c:(.text+0x5d58): undefined reference to `floor'
H5Zscaleoffset.c:(.text+0x5f2c): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x5f5c): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x5f84): undefined reference to `ceil'
H5Zscaleoffset.c:(.text+0x5f9d): undefined reference to `floor'
H5Zscaleoffset.c:(.text+0x60c9): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x6169): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x61d1): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x6201): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x6245): undefined reference to `pow'
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zscaleoffset.o):H5Zscaleoffset.c:(.text+0x6271):
 more undefined references to `pow' follow
/usr/local/hdf5-1.8.6/lib/libhdf5.a(H5Zscaleoffset.o): In function 
`H5Z_filter_scaleoffset':
H5Zscaleoffset.c:(.text+0x69af): undefined reference to `ceil'
H5Zscaleoffset.c:(.text+0x69c8): undefined reference to `floor'
H5Zscaleoffset.c:(.text+0x6a22): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x6a3c): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x6b13): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x6b2d): undefined reference to `pow'
H5Zscaleoffset.c:(.text+0x6b52): undefined reference to `ceil'
H5Zscaleoffset.c:(.text+0x6b6b): undefined reference to `floor'
collect2: ld returned 1 exit status
configure:26847: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.2"
| #define PACKAGE_STRING "netCDF 4.1.2"
| #define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.2"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define pgiFortran 1
| #define NF_INT1_T byte
| #define NF_INT2_T integer*2
| #define NF_INT1_IS_C_SIGNED_CHAR 1
| #define NF_INT2_IS_C_SHORT 1
| #define NF_INT_IS_C_INT 1
| #define NF_REAL_IS_C_FLOAT 1
| #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
| #define NCBYTE_T byte
| #define NCSHORT_T integer*2
| #define HAVE_LOCALE_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_VPRINTF 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_MKTEMP 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define HAVE_LIBZ 1
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fflush ();
| int
| main ()
| {
| return H5Fflush ();
|   ;
|   return 0;
| }
configure:26856: result: no
configure:26866: error: Can't find or link to the hdf5 library. Configure with 
--with-hdf5, or use       --disable-netcdf-4, or see config.log for errors.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_char_unsigned=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_ieeefloat=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=-fPIC
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_srcext_f90=none
ac_cv_func_MPI_Comm_f2c=no
ac_cv_func__doprnt=no
ac_cv_func_alloca_works=yes
ac_cv_func_fsync=yes
ac_cv_func_getrlimit=yes
ac_cv_func_gettimeofday=yes
ac_cv_func_mktemp=yes
ac_cv_func_snprintf=yes
ac_cv_func_strcasecmp=yes
ac_cv_func_strcat=yes
ac_cv_func_strchr=yes
ac_cv_func_strcpy=yes
ac_cv_func_strdup=yes
ac_cv_func_strerror=yes
ac_cv_func_strlcat=no
ac_cv_func_strrchr=yes
ac_cv_func_strtod=yes
ac_cv_func_strtoll=yes
ac_cv_func_vprintf=yes
ac_cv_have_decl_isfinite=yes
ac_cv_have_decl_isinf=yes
ac_cv_have_decl_isnan=yes
ac_cv_have_decl_signbit=yes
ac_cv_header_ctype_h=yes
ac_cv_header_dirent_dirent_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_errno_h=yes
ac_cv_header_fcntl_h=yes
ac_cv_header_getopt_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_locale_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdarg_h=yes
ac_cv_header_stdbool_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdio_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_sys_wait_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_hdf5_H5Fflush=no
ac_cv_lib_z_deflate=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='cc -E'
ac_cv_prog_CXXCPP='c++ -E'
ac_cv_prog_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=cc
ac_cv_prog_ac_ct_CXX=c++
ac_cv_prog_ac_ct_F77=gfortran
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_cc_c_o=yes
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_f90_uppercase_mod=no
ac_cv_prog_fc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_opendir='none required'
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int=4
ac_cv_sizeof_long=8
ac_cv_sizeof_off_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=8
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
ac_cv_target=x86_64-unknown-linux-gnu
ac_cv_type__Bool=yes
ac_cv_type_longlong=no
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
ac_cv_type_uchar=no
ac_cv_working_alloca_h=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
ax_cv_f90_modflag=-I
lt_cv_ar_at_file=@
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_force_load=no
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_F77=-fPIC
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_pic_works_F77=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_compiler_static_works_F77=yes
lt_cv_prog_compiler_static_works_FC=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[       
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[         ][      
]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/  
{\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/  
{"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ 
]*\)[ ]*$/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) 
\(lib[^ ]*\)$/  {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) 
\([^ ]*\)$/  {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int 
\1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /usr/local/src/netcdf-4.1.2/missing --run aclocal-1.11'
ALLOCA=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /usr/local/src/netcdf-4.1.2/missing --run tar'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /usr/local/src/netcdf-4.1.2/missing --run autoconf'
AUTOHEADER='${SHELL} /usr/local/src/netcdf-4.1.2/missing --run autoheader'
AUTOMAKE='${SHELL} /usr/local/src/netcdf-4.1.2/missing --run automake-1.11'
AWK='gawk'
BINFILE_NAME=''
BUILD_BENCHMARKS_FALSE=''
BUILD_BENCHMARKS_TRUE='#'
BUILD_CDMREMOTE_FALSE=''
BUILD_CDMREMOTE_TRUE=''
BUILD_CXX4_FALSE=''
BUILD_CXX4_TRUE=''
BUILD_CXX_FALSE=''
BUILD_CXX_TRUE='#'
BUILD_C_FALSE='#'
BUILD_C_TRUE=''
BUILD_DAP_FALSE=''
BUILD_DAP_TRUE=''
BUILD_DLL_FALSE=''
BUILD_DLL_TRUE='#'
BUILD_EXAMPLES_FALSE='#'
BUILD_EXAMPLES_TRUE=''
BUILD_F77_FALSE='#'
BUILD_F77_TRUE=''
BUILD_F90_FALSE='#'
BUILD_F90_TRUE=''
BUILD_LIBCF_FALSE=''
BUILD_LIBCF_TRUE=''
BUILD_PARALLEL_FALSE=''
BUILD_PARALLEL_TRUE=''
BUILD_SEPARATE_FORTRAN_FALSE='#'
BUILD_SEPARATE_FORTRAN_TRUE=''
BUILD_UDUNITS_FALSE=''
BUILD_UDUNITS_TRUE=''
BUILD_UTILITIES_FALSE='#'
BUILD_UTILITIES_TRUE=''
BUILD_V2_FALSE='#'
BUILD_V2_TRUE=''
CC='cc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CPP='cc -E'
CPPFLAGS='-fPIC -I/usr/local/zlib-1.2.5/include -I/usr/local/hdf5-1.8.6/include 
-I/usr/local/szip-2.1/include'
CROSS_COMPILING_FALSE=''
CROSS_COMPILING_TRUE=''
CURLDIR=''
CURL_CFLAGS=''
CURL_FCFLAGS=''
CURL_FFLAGS=''
CURL_LIBS=''
CXX='c++'
CXXCPP='c++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_DAP_LONG_TESTS_FALSE=''
ENABLE_DAP_LONG_TESTS_TRUE=''
ENABLE_DAP_REMOTE_TESTS_FALSE=''
ENABLE_DAP_REMOTE_TESTS_TRUE=''
EXEEXT=''
EXTERN_CFLAGS=''
EXTERN_CPPFLAGS=''
EXTERN_LDFLAGS=''
EXTRA_EXAMPLE_TESTS_FALSE=''
EXTRA_EXAMPLE_TESTS_TRUE=''
EXTRA_TESTS_FALSE=''
EXTRA_TESTS_TRUE='#'
F77='gfortran'
FC='gfortran'
FCFLAGS='-g -O2'
FCFLAGS_f90=''
FFLAGS='-g -O2'
FGREP='/bin/grep -F'
FTPBINDIR=''
GREP='/bin/grep'
HAS_CXX=''
HAS_DAP=''
HAS_F77=''
HAS_F90=''
HAS_HDF4=''
HAS_HDF5=''
HAS_NC2=''
HAS_NC4=''
HAS_PNETCDF=''
HAS_SZLIB=''
HDF4DIR=''
HDF5DIR='/usr/local/hdf5-1.8.6'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INTERNAL_OCLIB_FALSE='#'
INTERNAL_OCLIB_TRUE=''
LARGE_FILE_TESTS_FALSE=''
LARGE_FILE_TESTS_TRUE='#'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS=' -L/usr/local/zlib-1.2.5/lib -L/usr/local/hdf5-1.8.6/lib 
-L/usr/local/szip-2.1/lib'
LIBOBJS=''
LIBS='-lz '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} /usr/local/src/netcdf-4.1.2/missing --run makeinfo'
MAKEWHATIS_CMD=''
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
MOD_FLAG='-I'
NC_FLIBS=''
NC_LIBS=''
NETCDF_C_LIB=''
NM='/usr/bin/nm -B'
NMEDIT=''
NMFLAGS=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='netcdf'
PACKAGE_BUGREPORT='support-netcdf@xxxxxxxxxxxxxxxx'
PACKAGE_NAME='netCDF'
PACKAGE_STRING='netCDF 4.1.2'
PACKAGE_TARNAME='netcdf'
PACKAGE_URL=''
PACKAGE_VERSION='4.1.2'
PATH_SEPARATOR=':'
PNETCDFDIR=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
SZLIBDIR='/usr/local/szip-2.1'
TEST_F77_FALSE='#'
TEST_F77_TRUE=''
TEST_PARALLEL_FALSE=''
TEST_PARALLEL_TRUE=''
UPPER_CASE_MOD_FALSE=''
UPPER_CASE_MOD_TRUE='#'
USE_DAP_FALSE=''
USE_DAP_TRUE=''
USE_DISPATCH_FALSE=''
USE_DISPATCH_TRUE=''
USE_FFIO_FALSE=''
USE_FFIO_TRUE='#'
USE_HDF4_DIR_FALSE=''
USE_HDF4_DIR_TRUE=''
USE_HDF4_FALSE=''
USE_HDF4_FILE_TESTS_FALSE=''
USE_HDF4_FILE_TESTS_TRUE=''
USE_HDF4_TRUE=''
USE_HDF5_DIR_FALSE=''
USE_HDF5_DIR_TRUE=''
USE_LOGGING_FALSE=''
USE_LOGGING_TRUE=''
USE_NETCDF4_FALSE=''
USE_NETCDF4_TRUE=''
USE_NETCDF_C_LIB_DIR_FALSE=''
USE_NETCDF_C_LIB_DIR_TRUE='#'
USE_PNETCDF_DIR_FALSE=''
USE_PNETCDF_DIR_TRUE=''
USE_PNETCDF_FALSE=''
USE_PNETCDF_TRUE=''
USE_RENAMEV3_FALSE=''
USE_RENAMEV3_TRUE=''
USE_SZIP_FALSE=''
USE_SZIP_TRUE=''
USE_SZLIB_DIR_FALSE=''
USE_SZLIB_DIR_TRUE=''
USE_VALGRIND_TESTS_FALSE=''
USE_VALGRIND_TESTS_TRUE=''
USE_ZLIB_DIR_FALSE=''
USE_ZLIB_DIR_TRUE=''
VERSION='4.1.2'
WHATIS='whatis'
ZLIBDIR='/usr/local/zlib-1.2.5'
ac_ct_AR='ar'
ac_ct_CC='cc'
ac_ct_CXX='c++'
ac_ct_DUMPBIN=''
ac_ct_F77='gfortran'
ac_ct_FC='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /usr/local/src/netcdf-4.1.2/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local/netcdf-4.1.2'
prog=''
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target='x86_64-unknown-linux-gnu'
target_alias=''
target_cpu='x86_64'
target_os='linux-gnu'
target_vendor='unknown'

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "netCDF"
#define PACKAGE_TARNAME "netcdf"
#define PACKAGE_VERSION "4.1.2"
#define PACKAGE_STRING "netCDF 4.1.2"
#define PACKAGE_BUGREPORT "support-netcdf@xxxxxxxxxxxxxxxx"
#define PACKAGE_URL ""
#define PACKAGE "netcdf"
#define VERSION "4.1.2"
#define NCIO_MINBLOCKSIZE 256
#define USE_FSYNC 1
#define DEFAULT_CHUNK_SIZE 4194304
#define MAX_DEFAULT_CACHE_SIZE 67108864
#define DEFAULT_CHUNKS_IN_CACHE 10
#define CHUNK_CACHE_SIZE 4194304
#define CHUNK_CACHE_NELEMS 1009
#define CHUNK_CACHE_PREEMPTION 0.75
#define USE_EXTREME_NUMBERS 1
#define TEMP_LARGE "."
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define pgiFortran 1
#define NF_INT1_T byte
#define NF_INT2_T integer*2
#define NF_INT1_IS_C_SIGNED_CHAR 1
#define NF_INT2_IS_C_SHORT 1
#define NF_INT_IS_C_INT 1
#define NF_REAL_IS_C_FLOAT 1
#define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
#define NCBYTE_T byte
#define NCSHORT_T integer*2
#define HAVE_LOCALE_H 1
#define HAVE_DIRENT_H 1
#define STDC_HEADERS 1
#define HAVE_SYS_WAIT_H 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_STDIO_H 1
#define HAVE_STDARG_H 1
#define HAVE_ERRNO_H 1
#define HAVE_CTYPE_H 1
#define HAVE_FCNTL_H 1
#define HAVE_MALLOC_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STRINGS_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_GETOPT_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_VPRINTF 1
#define HAVE__BOOL 1
#define HAVE_STDBOOL_H 1
#define HAVE_STRERROR 1
#define HAVE_SNPRINTF 1
#define HAVE_STRCHR 1
#define HAVE_STRRCHR 1
#define HAVE_MKTEMP 1
#define HAVE_STRCAT 1
#define HAVE_STRCPY 1
#define HAVE_STRDUP 1
#define HAVE_STRCASECMP 1
#define HAVE_STRTOD 1
#define HAVE_STRTOLL 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_FSYNC 1
#define HAVE_ALLOCA_H 1
#define HAVE_ALLOCA 1
#define HAVE_DECL_ISNAN 1
#define HAVE_DECL_ISINF 1
#define HAVE_DECL_ISFINITE 1
#define HAVE_DECL_SIGNBIT 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_ST_BLKSIZE 1
#define HAVE_SSIZE_T 1
#define HAVE_PTRDIFF_T 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_LONG 8
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_OFF_T 8
#define SIZEOF_SIZE_T 8
#define HAVE_LIBZ 1
#define USE_NETCDF4 1
#define H5_USE_16_API 1

configure: exit 1

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