I'm trying to compile netcdf-fortran with openmpi and the intel compilers.
With 4.2 I get the following error running the tests:
Testing netCDF parallel I/O through the F90 API.
*** Testing netCDF-4 parallel I/O from Fortran 90.
Error: No such file or directory
2
Error: No such file or directory
2
Error: Parallel operation on file opened for non-parallel access
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
libhdf5.so.6 000000305B2F9D73 Unknown Unknown Unknown
libhdf5.so.6 000000305B36F5DA Unknown Unknown Unknown
libhdf5.so.6 000000305B544EED Unknown Unknown Unknown
libhdf5.so.6 000000305B439923 Unknown Unknown Unknown
libhdf5.so.6 000000305B438F1A Unknown Unknown Unknown
libhdf5.so.6 000000305B234AB7 Unknown Unknown Unknown
libhdf5.so.6 000000305B236680 Unknown Unknown Unknown
libnetcdf.so.6 0000003ACE44C56A Unknown Unknown Unknown
libnetcdf.so.6 0000003ACE4996A8 Unknown Unknown Unknown
libnetcdf.so.6 0000003ACE449D6B Unknown Unknown Unknown
libnetcdff.so.5 00007F8324CFD06B Unknown Unknown Unknown
libnetcdff.so.5 00007F8324D00A9E Unknown Unknown Unknown
lt-f90tst_paralle 0000000000409494 Unknown Unknown Unknown
lt-f90tst_paralle 000000000040892C Unknown Unknown Unknown
libc.so.6 000000305121ECDD Unknown Unknown Unknown
lt-f90tst_paralle 0000000000408829 Unknown Unknown Unknown
2
--------------------------------------------------------------------------
mpiexec has exited due to process rank 2 with PID 28157 on
node vulcan.cora.nwra.com exiting improperly. There are two reasons this could
occur:
1. this process did not call "init" before exiting, but others in
the job did. This can cause a job to hang indefinitely while it waits
for all processes to call "init". By rule, if one process calls "init",
then ALL processes must call "init" prior to termination.
2. this process called "init", but exited without calling "finalize".
By rule, all processes that call "init" MUST call "finalize" prior to
exiting or it will be considered an "abnormal termination"
This may have caused other processes in the application to be
terminated by signals sent by mpiexec (as reported here).
--------------------------------------------------------------------------
FAIL: run_f90_par_test.sh
Testing netCDF parallel I/O through the F77 API...
7
*** Testing netCDF-4 parallel I/O from Fortran 77.
7
7
7
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
lt-ftst_parallel 000000000047AE3A Unknown Unknown Unknown
lt-ftst_parallel 0000000000479936 Unknown Unknown Unknown
lt-ftst_parallel 0000000000431C40 Unknown Unknown Unknown
lt-ftst_parallel 00000000004118DE Unknown Unknown Unknown
lt-ftst_parallel 0000000000415073 Unknown Unknown Unknown
libpthread.so.0 0000003051E0F500 Unknown Unknown Unknown
libhdf5.so.6 000000305B2861D2 Unknown Unknown Unknown
libhdf5.so.6 000000305B27BD6A Unknown Unknown Unknown
libhdf5.so.6 000000305B2577FA Unknown Unknown Unknown
libhdf5.so.6 000000305B2CE7DD Unknown Unknown Unknown
libhdf5.so.6 000000305B2D193B Unknown Unknown Unknown
libhdf5.so.6 000000305B2D1395 Unknown Unknown Unknown
libhdf5.so.6 000000305B36EC5D Unknown Unknown Unknown
libhdf5.so.6 000000305B2CB2DE Unknown Unknown Unknown
libhdf5.so.6 000000305B2352DC Unknown Unknown Unknown
libc.so.6 0000003051235DB2 Unknown Unknown Unknown
lt-ftst_parallel 0000000000423037 Unknown Unknown Unknown
lt-ftst_parallel 0000000000408C0E Unknown Unknown Unknown
lt-ftst_parallel 00000000004087EC Unknown Unknown Unknown
libc.so.6 000000305121ECDD Unknown Unknown Unknown
lt-ftst_parallel 00000000004086E9 Unknown Unknown Unknown
--------------------------------------------------------------------------
mpiexec has exited due to process rank 3 with PID 28595 on
node vulcan.cora.nwra.com exiting improperly. There are two reasons this could
occur:
1. this process did not call "init" before exiting, but others in
the job did. This can cause a job to hang indefinitely while it waits
for all processes to call "init". By rule, if one process calls "init",
then ALL processes must call "init" prior to termination.
2. this process called "init", but exited without calling "finalize".
By rule, all processes that call "init" MUST call "finalize" prior to
exiting or it will be considered an "abnormal termination"
This may have caused other processes in the application to be
terminated by signals sent by mpiexec (as reported here).
--------------------------------------------------------------------------
FAIL: run_f77_par_test.sh
Any ideas?
In netcdf-fortran-4.2/f90/netcdf4_file.f90:
if (present(comm)) then
nf90_create = nf_create_par(path, cmode, comm, info, ncid)
else
nf90_create = nf_create(path, cmode, ncid)
end if
Looks like it creates in parallel mode if comm is present, which it should be:
call handle_err(nf90_create(FILE_NAME, mode_flag, ncid, comm =
MPI_COMM_WORLD, &
info = MPI_INFO_NULL))
So I'm at a loss. I do not seem to see this with gcc/gfortran.
Tried to compile 4.4-beta1 and I get:
mpif90 -I../../fortran -I../fortran -g -c -o f90tst_parallel.o
../../nf_test/f90tst_parallel.f90
../../nf_test/f90tst_parallel.f90(85): error #6404: This name does not have a
type, and must have an explicit type. [NF90_MPIIO]
mode_flag = IOR(mode_flag, nf90_mpiio)
-----------------------------^
../../nf_test/f90tst_parallel.f90(85): error #6363: The intrinsic data types
of the arguments must be the same. [IOR]
mode_flag = IOR(mode_flag, nf90_mpiio)
-----------------------------^
../../nf_test/f90tst_parallel.f90(120): error #6363: The intrinsic data types
of the arguments must be the same. [IOR]
call handle_err(nf90_open(FILE_NAME, IOR(nf90_nowrite, nf90_mpiio), ncid, &
---------------------------------------------------------^
compilation aborted for ../../nf_test/f90tst_parallel.f90 (code 1)
Looks like you are missing a definition of nf90_mpiio in
fortran/netcdf_constants.f90?
In 4.2 it's defined here:
./netcdf-fortran-4.2/f90/netcdf4_constants.f90:integer, parameter, public ::
nf90_mpiio = 8192, nf90_mpiposix = 16384, &
--
Orion Poplawski
Technical Manager 303-415-9701 x222
NWRA, Boulder Office FAX: 303-415-9702
3380 Mitchell Lane orion@xxxxxxxx
Boulder, CO 80301 http://www.nwra.com
