Dear Sir,
We are compiling netcdf-4.1.1 with hdf5-1.8.4-patch1 and zlib-1.2.7.
make check command on hdf5 and zlib has not returned any failures & hence we
guess it has been successfully installed on our system (IBM AIX6).
the configure command for building netcdf:
./configure --prefix=/home/iitm/Jayant/netcdf-4.1.1-hdf --enable-netcdf-4
--with-hdf5=/home/iitm/Jayant/hdf5-1.8.4-patch1
--with-zlib=/home/iitm/Jayant/zlib-1.2.7
The make command returns the following error:
Making all in ncgen3
source='main.c' object='main.o' libtool=no DEPDIR=.deps depmode=aix/bin/sh
../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4
-I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include
-I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o main.o
main.c
source='load.c' object='load.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh
../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4
-I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include
-I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o load.o
load.c
source='escapes.c' object='escapes.o' libtool=no DEPDIR=.deps depmode=aix
/bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I..
-I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include
-I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o
escapes.o escapes.c
source='getfill.c' object='getfill.o' libtool=no DEPDIR=.deps depmode=aix
/bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I..
-I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include
-I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o
getfill.o getfill.c
source='init.c' object='init.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh
../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4
-I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include
-I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o init.o
init.c
source='genlib.c' object='genlib.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh
../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4
-I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include
-I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o
genlib.o genlib.c
source='ncgentab.c' object='ncgentab.o' libtool=no DEPDIR=.deps depmode=aix
/bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I..
-I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include
-I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o
ncgentab.o ncgentab.c
/bin/sh ../libtool --tag=CC --mode=link xlc_r -O -qmaxmem=-1 -qarch=auto
-L/home/iitm/Jayant/hdf5-1.8.4-patch1/lib -L/home/iitm/Jayant/zlib-1.2.7/lib -o
ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o
../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lz -lmlibtool: link: xlc_r -O
-qmaxmem=-1 -qarch=auto -o ncgen3 main.o load.o escapes.o getfill.o init.o
genlib.o ncgentab.o -L/home/iitm/Jayant/hdf5-1.8.4-patch1/lib
-L/home/iitm/Jayant/zlib-1.2.7/lib ../libsrc4/.libs/libnetcdf.a
/home/iitm/Jayant/hdf5-1.8.4-patch1/lib/libhdf5_hl.a
/home/iitm/Jayant/hdf5-1.8.4-patch1/lib/libhdf5.a -lz -lm
ld: 0711-317 ERROR: Undefined symbol: .H5Tclose
ld: 0711-317 ERROR: Undefined symbol: .H5Gmove2
ld: 0711-317 ERROR: Undefined symbol: .H5Dextend
ld: 0711-317 ERROR: Undefined symbol: .H5open
ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_DATASET_CREATE_g
ld: 0711-317 ERROR: Undefined symbol: .H5Pcreate
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_chunk
ld: 0711-317 ERROR: Undefined symbol: .H5Screate_simple
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_attr_creation_order
ld: 0711-317 ERROR: Undefined symbol: H5T_IEEE_F32BE_g
ld: 0711-317 ERROR: Undefined symbol: .H5Dcreate1
ld: 0711-317 ERROR: Undefined symbol: .H5Sclose
ld: 0711-317 ERROR: Undefined symbol: .H5Pclose
ld: 0711-317 ERROR: Undefined symbol: .H5DSset_scale
ld: 0711-317 ERROR: Undefined symbol: .H5Dclose
ld: 0711-317 ERROR: Undefined symbol: .H5Gunlink
ld: 0711-317 ERROR: Undefined symbol: .H5DSdetach_scale
ld: 0711-317 ERROR: Undefined symbol: .H5Gget_num_objs
ld: 0711-317 ERROR: Undefined symbol: .H5Oget_info_by_idx
ld: 0711-317 ERROR: Undefined symbol: .H5Lget_name_by_idx
ld: 0711-317 ERROR: Undefined symbol: .H5DSattach_scale
ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_GROUP_CREATE_g
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_link_creation_order
ld: 0711-317 ERROR: Undefined symbol: .H5Gcreate2
ld: 0711-317 ERROR: Undefined symbol: .H5Gclose
ld: 0711-317 ERROR: Undefined symbol: .H5Gopen2
ld: 0711-317 ERROR: Undefined symbol: .H5Aget_num_attrs
ld: 0711-317 ERROR: Undefined symbol: .H5Aopen_idx
ld: 0711-317 ERROR: Undefined symbol: .H5Aget_name
ld: 0711-317 ERROR: Undefined symbol: .H5Screate
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_INT_g
ld: 0711-317 ERROR: Undefined symbol: .H5Acreate1
ld: 0711-317 ERROR: Undefined symbol: .H5Awrite
ld: 0711-317 ERROR: Undefined symbol: .H5Aclose
ld: 0711-317 ERROR: Undefined symbol: .H5Tenum_create
ld: 0711-317 ERROR: Undefined symbol: .H5Tenum_insert
ld: 0711-317 ERROR: Undefined symbol: .H5Tcommit1
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_native_type
ld: 0711-317 ERROR: Undefined symbol: .H5Tcreate
ld: 0711-317 ERROR: Undefined symbol: .H5Tvlen_create
ld: 0711-317 ERROR: Undefined symbol: .H5Tarray_create1
ld: 0711-317 ERROR: Undefined symbol: .H5Tinsert
ld: 0711-317 ERROR: Undefined symbol: .H5Tset_size
ld: 0711-317 ERROR: Undefined symbol: .H5Tset_strpad
ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_DATASET_ACCESS_g
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_layout
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_chunk_cache
ld: 0711-317 ERROR: Undefined symbol: .H5Dcreate2
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_fletcher32
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_deflate
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_shuffle
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_fill_value
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I8BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_SCHAR_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I8LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_C_S1_g
ld: 0711-317 ERROR: Undefined symbol: .H5Tcopy
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I16BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_SHORT_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I16LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I32BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I32LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_FLOAT_g
ld: 0711-317 ERROR: Undefined symbol: H5T_IEEE_F32LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_IEEE_F64BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_DOUBLE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_IEEE_F64LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U8BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_UCHAR_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U8LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U16BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_USHORT_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U16LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U32BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_UINT_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U32LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I64BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_LLONG_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I64LE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U64BE_g
ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_ULLONG_g
ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U64LE_g
ld: 0711-317 ERROR: Undefined symbol: .H5Gget_objinfo
ld: 0711-317 ERROR: Undefined symbol: .H5Dget_space
ld: 0711-317 ERROR: Undefined symbol: .H5Sget_simple_extent_type
ld: 0711-317 ERROR: Undefined symbol: .H5Sget_simple_extent_dims
ld: 0711-317 ERROR: Undefined symbol: .H5Dopen2
ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_DATASET_XFER_g
ld: 0711-317 ERROR: Undefined symbol: .H5Dread
ld: 0711-317 ERROR: Undefined symbol: .H5Sselect_hyperslab
ld: 0711-317 ERROR: Undefined symbol: .H5Dwrite
ld: 0711-317 ERROR: Undefined symbol: .H5Adelete
ld: 0711-317 ERROR: Undefined symbol: .H5Gmove
ld: 0711-317 ERROR: Undefined symbol: .H5Tequal
ld: 0711-317 ERROR: Undefined symbol: .H5Sget_simple_extent_ndims
ld: 0711-317 ERROR: Undefined symbol: .H5Fclose
ld: 0711-317 ERROR: Undefined symbol: .H5Fflush
ld: 0711-317 ERROR: Undefined symbol: .H5Eset_auto1
ld: 0711-317 ERROR: Undefined symbol: .H5check_version
ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_FILE_ACCESS_g
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_fclose_degree
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_cache
ld: 0711-317 ERROR: Undefined symbol: .H5Fopen
ld: 0711-317 ERROR: Undefined symbol: .H5Dget_access_plist
ld: 0711-317 ERROR: Undefined symbol: .H5DSis_scale
ld: 0711-317 ERROR: Undefined symbol: .H5DSget_num_scales
ld: 0711-317 ERROR: Undefined symbol: .H5Pget_chunk_cache
ld: 0711-317 ERROR: Undefined symbol: .H5Dget_create_plist
ld: 0711-317 ERROR: Undefined symbol: .H5Pget_layout
ld: 0711-317 ERROR: Undefined symbol: .H5Pget_nfilters
ld: 0711-317 ERROR: Undefined symbol: .H5Pget_filter2
ld: 0711-317 ERROR: Undefined symbol: .H5Pfill_value_defined
ld: 0711-317 ERROR: Undefined symbol: .H5Pget_fill_value
ld: 0711-317 ERROR: Undefined symbol: .H5DSiterate_scales
ld: 0711-317 ERROR: Undefined symbol: .H5Pget_chunk
ld: 0711-317 ERROR: Undefined symbol: .H5Topen2
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_size
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_class
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_nmembers
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_member_name
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_member_value
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_member_type
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_member_offset
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_array_ndims
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_array_dims1
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_super
ld: 0711-317 ERROR: Undefined symbol: .H5Tis_variable_str
ld: 0711-317 ERROR: Undefined symbol: .H5Aget_type
ld: 0711-317 ERROR: Undefined symbol: .H5Aget_space
ld: 0711-317 ERROR: Undefined symbol: .H5Sget_simple_extent_npoints
ld: 0711-317 ERROR: Undefined symbol: .H5Aread
ld: 0711-317 ERROR: Undefined symbol: .H5Dget_type
ld: 0711-317 ERROR: Undefined symbol: .H5Tget_order
ld: 0711-317 ERROR: Undefined symbol: .H5Aopen_name
ld: 0711-317 ERROR: Undefined symbol: .H5DSget_scale_name
ld: 0711-317 ERROR: Undefined symbol: .H5Pset_libver_bounds
ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_FILE_CREATE_g
ld: 0711-317 ERROR: Undefined symbol: .H5Fcreate
ld: 0711-317 ERROR: Undefined symbol: .H5close
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more information.
make: 1254-004 The error code from the last command is 8.
Stop.
make: 1254-004 The error code from the last command is 1.
Stop.
make: 1254-004 The error code from the last command is 2.
Stop .
How to resolve this issue.
Best regards,
Jayant
