I don't know about JULES, but:
The complaint refers to your netcdf 4.1.3 version not being compiled with
NetCDF 4 support (you have to enable this via a configure flag).
Second, I can't remember if NetCDF 4 automatically defines nf90_mpiio even
if a non-mpi compilation has been performed, if so that should also
disappear. Otherwise you need to compile netcdf with MPI enabled (you can
ask your colleague whether (s)he used MPI or not.
The flag for the configure script for enabling Netcdf 4 support is:
--enable-netcdf-4
If you compile with MPI it will automatically be detected.
I sure do hope you are not using gcc v.1.2.1
I do hope that is a typo! :)
If not, please use a more recent version of gcc/gfortran.
Lastly, the newer NetCDF should be preferred. Possibly you have had errors
which refers to the DAP support, if so, configure with the "--disable-dap"
flag to disable DAP support.
Kind regards Nick
2013/7/1 J Iwema <Joost.Iwema@xxxxxxxxxxxxx>
> Dear,
>
> I compiled and installed NetCDF 4.1.3 succesfully on my Ubuntu machine
> (newer versions of NetCDF gave some errors). Then I tried to install the
> land surface model JULES 3.3. This failed at running:
> make BUILD=run COMPILER=gfortran
>
> I got the following errors:
> Error: Symbol 'nf90_netcdf4' referenced at (1) not found in module 'netcdf'
> Error: Symbol 'nf90_mpiio' referenced at (1) not found in module 'netcdf'
>
> I tried changing variables in the Makefile.comp.gfortran. With the
> settings shown here beneath, a colleague was able to successfully install
> JULES on a Mac, by I failed on my Ubuntu (3.5.0-32-generic
> #53~precise1-Ubuntu). I have got no idea anymore what to do.
> Thanks very much for any help!
>
> Joost
> University of Bristol
>
> #########################################################################
> ## Compiler specific variables for gfortran (from gcc v1.2.1) ##
> ## ##
> ## FC = Fortran compiler command ##
> ## CC = C compiler command ##
> ## CPP = C++ compiler command ##
> ## FPP = Flag for enabling pre-processor ##
> ## FPP_FDEF = Flag for defining pre-processor variables ##
> ## FPP_INC = Flag for adding pre-processor include search paths ##
> ## FF_RUN = Compiler flags for normal operation. ##
> ## FF_DBG = Compiler flags for debugging. ##
> ## FF_FAST = Compiler flags for optimised performance. ##
> ## FF_CON = Compiler flags for Condor. ##
> ## LIB_INC = Flag for adding library search paths. ##
> ## LIB_PRE = Flag for linking a specific library. ##
> ## LIB_FPRE = Prefix common to all library archive filenames. ##
> ## LIB_FSUF = Suffix/extension common to all library archive filenames.##
> ## LINKER = Fortran compiler command for the linking (loader) stage ##
> ## MOD_INC = Flag for adding Fortran 90 module search paths. ##
> ## MOD_FSUF = Suffix/extension common to all Fortran 90 modules ##
> #########################################################################
> FC=gfortran -fno-underscoring
> CC=gcc
> CPP=g++
> FPP=
> FPP_FDEF=-D
> FPP_INC=-I
> FF_RUN=-fbounds-check
> FF_DBG=-g -pg -fbounds-check -Wall
> FF_FAST=-O3
> FF_CON=-O3
> LIB_INC=-L
> LIB_PRE=-l
> LIB_FPRE=lib
> LIB_FSUF=.a
> LINKER=$(FC)
> MOD_PUT=-J
> MOD_INC=-I
> MOD_FSUF=.mod
>
>
>
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