[netcdfgroup] build netcdf-4.0 on Mac


Hi, I just made a stab at building netcdf-4.0 on a Macbook Pro.
The ./configure succeeded, but the "make check" failed as per
the attached output. My Mac is running OSX 10.7.5. Here is output
from uname -a:

Darwin vpn14.ucar.edu 11.4.2 Darwin Kernel Version 11.4.2: Thu Aug 23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64

I am planning to use pgf90 v10.8 to compile code that uses the netcdf
F77 interface: /opt/pgi/osx86-64/10.8/bin/pgf90.

Thanks for suggestions,

--Ben

Making check in f90
make[1]: Nothing to be done for `check'.
Making check in fortran
make  check-am
make[2]: Nothing to be done for `check-am'.
Making check in libsrc
make  check-am
make  t_nc
make[3]: `t_nc' is up to date.
make  check-TESTS
trying again
dimrename: IXX
nc_close ret = 0

reopen id = 3 for filename test.nc
NC done
GATTR VAR VATTR
VATTR
VATTR
VATTR
VATTR
VATTR
fill_seq indices         1 2 3  75.000000 != 2.718282
Done
got val = 3.250000
got val = 0.000000
got val = 2.718282
got val = 82555
got val = 97
got NC_CHAR val = A (0x41) 
got NC_CHAR val = B (0x42) 
got NC_CHAR val = "The red death had long devastated the country."
got val = A (0x41) 
got val = B (0x42) 
got val = "The red death had long devastated the country."
got vals = 0.000000 ... 447.000000
re nc_close ret = 0
PASS: t_nc
==================
All 1 tests passed
==================
Making check in nctest
make  nctest
make[2]: `nctest' is up to date.
make  check-TESTS
Testing V2 API with 2 different netCDF formats.


Switching to netCDF classic format.
*** Testing nccreate ...        ok ***
*** Testing ncopen ...          ok ***
*** Testing ncredef ...         ok ***
*** Testing ncendef ...         ok ***
*** Testing ncclose ...         ok ***
*** Testing ncinquire ...       ok ***
*** Testing ncsync ...          ok ***
*** Testing ncabort ...         ok ***
*** Testing ncdimdef ...        ok ***
*** Testing ncdimid ...         ok ***
*** Testing ncdiminq ...        ok ***
*** Testing ncdimrename ...     ok ***
*** Testing ncvardef ...        ok ***
*** Testing ncvarid ...         ok ***
*** Testing ncvarinq ...        ok ***
*** Testing ncvarput1 ...       ok ***
*** Testing ncvarget1 ...       ok ***
*** Testing ncvarput ...        ok ***
*** Testing ncvarget ...        ok ***
*** Testing ncvarputg ...       ok ***
*** Testing ncvargetg ...       ok ***
*** Testing ncrecinq ...        ok ***
*** Testing ncrecput ...        ok ***
*** Testing ncrecget ...        ok ***
*** Testing ncvarrename ...     ok ***
*** Testing ncattput ...        ok ***
*** Testing ncattinq ...        ok ***
*** Testing ncattget ...        ok ***
*** Testing ncattcopy ...       ok ***
*** Testing ncattname ...       ok ***
*** Testing ncattrename ...     ok ***
*** Testing ncattdel ...        ok ***
*** Testing nctypelen ...       ok ***


Switching to 64-bit offset format.
*** Testing nccreate ...        ok ***
*** Testing ncopen ...          ok ***
*** Testing ncredef ...         ok ***
*** Testing ncendef ...         ok ***
*** Testing ncclose ...         ok ***
*** Testing ncinquire ...       ok ***
*** Testing ncsync ...          ok ***
*** Testing ncabort ...         ok ***
*** Testing ncdimdef ...        ok ***
*** Testing ncdimid ...         ok ***
*** Testing ncdiminq ...        ok ***
*** Testing ncdimrename ...     ok ***
*** Testing ncvardef ...        ok ***
*** Testing ncvarid ...         ok ***
*** Testing ncvarinq ...        ok ***
*** Testing ncvarput1 ...       ok ***
*** Testing ncvarget1 ...       ok ***
*** Testing ncvarput ...        ok ***
*** Testing ncvarget ...        ok ***
*** Testing ncvarputg ...       ok ***
*** Testing ncvargetg ...       ok ***
*** Testing ncrecinq ...        ok ***
*** Testing ncrecput ...        ok ***
*** Testing ncrecget ...        ok ***
*** Testing ncvarrename ...     ok ***
*** Testing ncattput ...        ok ***
*** Testing ncattinq ...        ok ***
*** Testing ncattget ...        ok ***
*** Testing ncattcopy ...       ok ***
*** Testing ncattname ...       ok ***
*** Testing ncattrename ...     ok ***
*** Testing ncattdel ...        ok ***
*** Testing nctypelen ...       ok ***

Total number of failures: 0
nctest SUCCESS!!!
PASS: nctest
PASS: compare_test_files.sh
==================
All 2 tests passed
==================
Making check in ncgen
make  check-TESTS
*** Testing ncgen.
*** creating classic file c0.nc from c0.cdl...
*** creating 64-bit offset file c0_64.nc from c0.cdl...
*** Test successful!
PASS: run_tests.sh
==================
All 1 tests passed
==================
Making check in ncdump
make  check-am
make  rewrite-scalar ctest ctest64 ncdump tst_utf8 
make[3]: `rewrite-scalar' is up to date.
make[3]: `ctest' is up to date.
make[3]: `ctest64' is up to date.
make[3]: `ncdump' is up to date.
make[3]: `tst_utf8' is up to date.
make  check-TESTS

*** Testing ncgen and ncdump using some test CDL files.
*** creating tst_small.nc from ref_tst_small.cdl...
*** creating tst_small.cdl from tst_small.nc...
*** creating test0.nc from test0.cdl...
*** creating test1.cdl from test0.nc...
*** creating test1.nc from test1.cdl...
*** creating test2.cdl from test1.nc...
*** checking that test1.cdl and test2.nc are the same...
*** All tests of ncgen and ncdump using test0.cdl passed!
PASS: run_tests.sh

*** Testing ncgen and ncdump with 64-bit offset format.
*** creating test0.nc from test0.cdl...
*** creating test1.cdl from test0.nc...
*** creating test1.nc from test1.cdl...
*** creating test2.cdl from test1.nc...
*** All ncgen and ncdump with 64-bit offset format tests passed!
PASS: tst_64bit.sh
PASS: ctest
PASS: ctest64

*** Testing ncgen and ncdump test output for classic format.
*** creating ctest1.cdl from ctest0.nc...
*** creating c0.nc from c0.cdl...
*** creating c1.cdl from c0.nc...
*** comparing ncdump of C program output (ctest1.cdl) with c1.cdl...
*** test output for ncdump -k
*** test output for ncdump -x
*** creating tst_ncml.nc from tst_ncml.cdl
*** creating c1.ncml from tst_ncml.nc
*** comparing ncdump -x of generated file with ref1.ncml ...
*** All ncgen and ncdump test output for classic format passed!
*** Testing ncgen and ncdump test output for 64-bit offset format.
*** creating ctest1.cdl from test0_64.nc...
*** creating c0.nc from c0.cdl...
*** creating c1.cdl from c0.nc...
*** comparing ncdump of C program output (ctest1_64.cdl) with c1.cdl...
*** test output for ncdump -k
*** All ncgen and ncdump test output for 64-bit offset format passed!
PASS: tst_output.sh
*** testing length of classic file
*** testing length of classic file written with NOFILL
*** testing length of rewritten classic file
*** testing length of rewritten classic file written with NOFILL
*** testing length of 64-bit offset file
*** testing length of 64-bit offset file written with NOFILL
*** testing length of rewritten 64-bit offset file
*** testing length of rewritten 64-bit offset file written with NOFILL
*** testing length of one-record-variable classic file
*** testing length of one-record-variable classic file written with NOFILL
*** testing length of one-record-variable 64-bit offset file
*** testing length of one-record-variable 64-bit offset file written with NOFILL
PASS: tst_lengths.sh
*** creating UTF-8 test file tst_utf8.nc...ok.
*** Tests successful!
PASS: tst_utf8

*** Testing ncgen and ncdump for UTF8 support...
*** creating classic offset file with utf8 characters...
*** dump and compare utf8 output...
*** creating 64-bit offset file with utf8 characters...
*** (64 bit) dump and compare utf8 output...
*** dumping tst_utf8.nc to tst_utf8.cdl...
*** comparing tst_utf8.cdl with tst8.cdl...
*** All utf8 tests of ncgen and ncdump passed!
PASS: run_utf8_tests.sh
==================
All 8 tests passed
==================
Making check in nf_test
make  nf_test tst_f77_v2     ftest tst_f90
/bin/sh ../libtool --tag=F77   --mode=link pgf77 -I../fortran      -I../libsrc 
-I../fortran  -I../f90 -g        -o nf_test test_get.o test_put.o nf_error.o 
nf_test.o test_read.o test_write.o util.o fortlib.o      ../libsrc/libnetcdf.la 
  
libtool: link: pgf77 -I../fortran -I../libsrc -I../fortran -I../f90 -g -o 
nf_test test_get.o test_put.o nf_error.o nf_test.o test_read.o test_write.o 
util.o fortlib.o  ../libsrc/.libs/libnetcdf.a
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  "_nf_inq_compound_field_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_compound_fieldname_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_compound_fieldindex_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_compound_fieldoffset_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_compound_fieldtype_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_compound_fieldndims_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_compound_fielddim_sizes_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_def_vlen_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_vlen_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_free_vlen_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_def_enum_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_insert_enum_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_enum_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_enum_member_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_enum_ident_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_def_opaque_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_inq_opaque_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_put_att_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
     (maybe you meant: _nf_put_att_double_, _nf_put_att_int_ , 
_test_nf_put_att_int_ , _nf_put_att_real_ , _test_nf_put_att_real_ , 
_nf_put_att_int1_ , _nf_put_att_int2_ , _nf_put_att_text_ , 
_test_nf_put_att_double_ , _test_nf_put_att_int1_ , _test_nf_put_att_int2_ , 
_test_nf_put_att_text_ )
  "_nf_get_att_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
     (maybe you meant: _test_nf_get_att_int1_, _test_nf_get_att_int2_ , 
_test_nf_get_att_text_ , _nf_get_att_int_ , _test_nf_get_att_int_ , 
_test_nf_get_att_double_ , _nf_get_att_double_ , _nf_get_att_real_ , 
_test_nf_get_att_real_ , _nf_get_att_int1_ , _nf_get_att_int2_ , 
_nf_get_att_text_ )
  "_nf_put_var_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
     (maybe you meant: _nf_put_var_int_, _test_nf_put_var_int_ , 
_nf_put_var_double_ , _nf_put_var_real_ , _test_nf_put_var_real_ , 
_nf_put_var_int1_ , _nf_put_var_int2_ , _nf_put_var_text_ , 
_test_nf_put_var_int1_ , _test_nf_put_var_int2_ , _test_nf_put_var_text_ , 
_test_nf_put_var_double_ )
  "_nf_get_var_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
     (maybe you meant: _nf_get_var_int_, _test_nf_get_var_real_ , 
_nf_get_var_int1_ , _nf_get_var_int2_ , _test_nf_get_var_int_ , 
_nf_get_var_text_ , _test_nf_get_var_int1_ , _test_nf_get_var_int2_ , 
_test_nf_get_var_text_ , _test_nf_get_var_double_ , _nf_get_var_real_ , 
_nf_get_var_double_ )
  "_nf_get_vlen_element_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
  "_nf_put_vlen_element_", referenced from:
      _L.715_36_0_3 in test_get.o
      _L.715_54_0_3 in test_put.o
      _L.717_5_0_3 in nf_error.o
      _L.713_2_0_3 in nf_test.o
      _L.715_25_0_3 in test_read.o
      _L.718_15_0_3 in test_write.o
      _L.717_38_0_3 in util.o
      ...
ld: symbol(s) not found for architecture x86_64
make[2]: *** [nf_test] Error 2
make[1]: *** [check-am] Error 2
make: *** [check-recursive] Error 1
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