Padala,
My mistake. --with-hdf5 is obsolete, for use only with older Netcdf
versions. Supplemental libraries are now specified with the CPPFLAGS
and LDFLAGS environment variables. Also, include and lib
subdirectories ARE included in the paths.
Please carefully follow the configure instructions on the current
build page. See the paragraph starting with "After HDF5 is done":
http://www.unidata.ucar.edu/software/netcdf/docs/build_default.html
Also, always include the user list in technical replies! Thank you.
--Dave
On Sat, Oct 5, 2013 at 1:29 PM, padala chittibabu
<padalachittibabu1@xxxxxxxxx> wrote:
> Hi Dave,
> I tried as you suggested. Still I have same problems. Some reason configure
> script unable recognise the hdf5 folder when I am trying to build with
> hdf5. May be error is something else which I am unable to understand.
>
> cheers,
>
> Padala
>
> On Sat, Oct 5, 2013 at 3:21 PM, Dave Allured - NOAA Affiliate
> <dave.allured@xxxxxxxx> wrote:
>>
>> Padala,
>>
>> Not sure about this, but I think you need to specify the upper level
>> install directory for HDF5, not including the "lib" subdirectory.
>> "lib" should be added automatically by the configure process. This
>> would be consistent with your reported symptom. HTH:
>>
>> --with-hdf5=/usr/local/hdf5
>>
>> --Dave
>>
>> On Fri, Oct 4, 2013 at 4:02 PM, padala chittibabu
>> <padalachittibabu1@xxxxxxxxx> wrote:
>> > Hi,
>> >
>> > I am trying to build netcdf4.3 with hdf5 on Redhat Linux enterprise 6.4
>> > , 64
>> > bit machine. I installed GCC 4.8.1 and open mpi 1.6.5. I also
>> > successfully
>> > build hdf5 in prallel mode and zlib. I am getting this error during
>> > configuration netcdf 4.3. Please see attached config.log. I dont get
>> > this
>> > error if I use --disable-netcdf-4 configuration option. Please help.
>> > Thanks
>> > in advance.
>> >
>> > ./configure --enable-netcdf-4 --with-hdf5=/usr/local/hdf5/lib
>> >
>> > checking for library containing H5Fflush... no
>> > configure: error: Can't find or link to the hdf5 library. Use
>> > --disable-netcdf-4, or see config.log for errors.
>> >
>> > Padala
>> >
>> > --
>> > Padala Chittibabu Ph.D
>> > Physical Scientist
>> > Fisheries and Oceans Canada
>> > Winnipeg
