I am trying to build netCDF with netCDF-4 support on OS X 10.10 (Yosemite).
I successfully built zlib and HDF5 (I think) with --prefix=/usr/local.
When I try to build netCDF with --prefix=/usr/local I get the following error
advect> ./configure --prefix=/usr/local
configure: netCDF 4.3.3.1
checking build system type... x86_64-apple-darwin14.1.0
checking host system type... x86_64-apple-darwin14.1.0
checking target system type... x86_64-apple-darwin14.1.0
.
.
.
checking for library containing H5Fflush... no
configure: error: Can't find or link to the hdf5 library. Use
--disable-netcdf-4, or see config.log for errors.
It looks to me like the HDF libraries are in /usr/local
advect> ll /usr/local/lib
total 14640
-rwxr-xr-x 1 root wheel 2525216 Feb 27 18:23 libhdf5.9.dylib*
-rw-r--r-- 1 root wheel 4444424 Feb 27 18:23 libhdf5.a
lrwxr-xr-x 1 root wheel 15 Feb 27 18:23 libhdf5.dylib@ ->
libhdf5.9.dylib
-rwxr-xr-x 1 root wheel 940 Feb 27 18:23 libhdf5.la*
-rw-r--r-- 1 root wheel 2067 Feb 27 18:23 libhdf5.settings
-rwxr-xr-x 1 root wheel 118908 Feb 27 18:23 libhdf5_hl.9.dylib*
-rw-r--r-- 1 root wheel 164272 Feb 27 18:23 libhdf5_hl.a
lrwxr-xr-x 1 root wheel 18 Feb 27 18:23 libhdf5_hl.dylib@ ->
libhdf5_hl.9.dylib
-rwxr-xr-x 1 root wheel 984 Feb 27 18:23 libhdf5_hl.la*
-rwxr-xr-x 1 root wheel 88244 Feb 27 16:46 libz.1.2.8.dylib*
lrwxr-xr-x 1 root wheel 16 Feb 27 16:46 libz.1.dylib@ ->
libz.1.2.8.dylib
-rw-r--r-- 1 root wheel 109536 Feb 27 16:46 libz.a
lrwxr-xr-x 1 root wheel 16 Feb 27 16:46 libz.dylib@ -> libz.1.2.8.dylib
drwxr-xr-x 3 root wheel 102 Feb 27 16:46 pkgconfig/
And netCDF will build successfuly if I use --disable_netcdf-4.
-rwxr-xr-x 1 root wheel 1086716 Feb 27 18:38 libnetcdf.7.dylib*
-rw-r--r-- 1 root wheel 3309160 Feb 27 18:38 libnetcdf.a
lrwxr-xr-x 1 root wheel 17 Feb 27 18:38 libnetcdf.dylib@ ->
libnetcdf.7.dylib
-rwxr-xr-x 1 root wheel 961 Feb 27 18:38 libnetcdf.la*
-rw-r--r-- 1 root wheel 717 Feb 27 18:38 libnetcdf.settings
Any suggestions?
Thanks, Ken Bowman
____________________________________________________________________________
Kenneth P. Bowman
David Bullock Harris Professor of Geosciences
Department of Atmospheric Sciences
Texas A&M University
3150 TAMU
College Station, TX 77843-3150
k-bowman@xxxxxxxx<mailto:k-bowman@xxxxxxxx>
Voice 979-862-4060
Fax 979-862-4466
http://atmo.tamu.edu/profile/KBowman
