Hi Svetlana
1) Your config.log tells that it
is using pgcc (PGI C compiler).
Is this really what you want?
I would try gcc instead (CC=gcc)
It also throws an error for an unknown pgcc flag (another reason
not to try gcc instead).
configure:4385: /opt/pgi/linux86-64/9.0/bin/pgcc -qversion >&5
pgcc-Error-Unknown switch: -qversion
2) You need a blank/space separating the two library directories,
i.e., NOT:
LDFLAGS=-L/usr/local/lib-L/usr/local/hdf5/lib
but
LDFLAGS='-L/usr/local/lib -L/usr/local/hdf5/lib'
The error you mentioned, which is reported in config.log,
stems from the mistake above.
Because of it HDF5 was never picked up by configure,
and configure fails right on that spot.
(Not sure why you would need -L/usr/local/lib
besides -L/usr/local/hdf5/lib
Do you really need the former?
Probably not for the hdf5 libraries, which as you said are installed in
/usr/local/hdf5/lib
I would try:
LDFLAGS='-L/usr/local/hdf5/lib'
I hope this helps,
Gus Correa
On 07/30/2015 02:49 PM, Music, Svetlana wrote:
Hi Gus,
Thank you for your response. I tried
$ ./configure -prefix=/usr/local LDFLAGS=-L/usr/local/lib-L/usr/local/hdf5/lib
LIBS=lmfhdf-ldf CFLAGS=-fPIC
and it gave me an error: C compiler cannot create executables (config.log is
attached)
What am I doing wrong?
Thanks again for your help!
Svetlana Music | Senior Meteorologist | Svetlana.Music@xxxxxxxxxxxxxxxxxx
ARCADIS Canada Inc. | 121 Granton Drive | Richmond Hill, ON, L4B 3N4
T. 905 764 9380 | F. 905 764 9386
www.arcadis.com
ARCADIS, Imagine the result
Please consider the environment before printing this email.
-----Original Message-----
From: Gus Correa [mailto:gus@xxxxxxxxxxxxxxxxx]
Sent: July-29-15 12:00 PM
To: Music, Svetlana
Subject: Re: [netcdfgroup] Error in configure netCDF-c-4.3.3.1
Hi Svetlana
I had something like this to configure older 4.3.0:
CPPFLAGS="-I/usr/local/hdf5/include"
LDFLAGS="-L/usr/local/hdf5/lib"
LIBS="-lmfhdf -ldf"
I hope this helps,
Gus Correa
On 07/29/2015 09:57 AM, Music, Svetlana wrote:
Hi,
I am trying to configure netcdf-c-4.3.3.1
configure -prefix=/usr/local LDFLAGS=-L/usr/local/lib CFLAGS=-fPIC
and there is an error: Can't find or link to the hdf5 library. The
config.log is attached. The hdf5 is installed on /usr/local/hdf5
Please help!
Svetlana
**
*Svetlana Music*| Senior Meteorologist |
_Svetlana.Music@xxxxxxxxxxxxxxxxxx
<mailto:Svetlana.Music@xxxxxxxxxxxxxxxxxx>_
ARCADIS Canada Inc.| 121 Granton Drive | Richmond Hill, ON, L4B 3N4 T.
905 764 9380 | F. 905 764 9386 www.arcadis.com
<http://www.arcadis.com>
ARCADIS, Imagine the result
PPlease consider the environment before printing this email.
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