Hi Mahmood,
firstly there would be a type in your call to configure: "--with-hd5=“ would
have to be "--with-hdf5=“, but in netcdf-4.4.1 there is no option --with-hdf5
according to ./configure --help.
What I usually do is:
LD_LIBRARY_PATH=“/export/apps/computer/hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib:$LD_LIBRARY_PATH”
\
LIBS="-lhdf5 -lhdf5_hl -lsz -lz" \
./configure \
…
It’s weird because it should be in your path already, but …
Cheers
Dom
> On 21/07/2016, at 3:17 PM, Mahmood Naderan <mahmood.nt@xxxxxxxxx> wrote:
>
> Hi,
> There are several pages about this error
>
> configure: error: Can't find or link to the hdf5 library. Use
> --disable-netcdf-4, or see config.log for errors.
>
>
> However, I am sure that hd5 library is OK. I downloaded the package and gave
> the path to the configure script.
>
> root@cluster:~# cd /export/apps/computer/netcdf-4.4.1
> root@cluster:netcdf-4.4.1# ls
> ../hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/
> bin COPYING include lib README RELEASE.txt share
> root@cluster:netcdf-4.4.1# ls
> ../hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib
> libhdf5.a libhdf5_fortran.so.10.0.3 libhdf5hl_fortran.so.10
> libhdf5.so.10.2.0
> libhdf5_cpp.a libhdf5_hl.a libhdf5hl_fortran.so.10.0.3
> libsz.so
> libhdf5_cpp.so libhdf5_hl_cpp.a libhdf5_hl.so
> libsz.so.2
> libhdf5_cpp.so.12 libhdf5_hl_cpp.so libhdf5_hl.so.10
> libsz.so.2.0.0
> libhdf5_cpp.so.12.0.0 libhdf5_hl_cpp.so.11 libhdf5_hl.so.10.1.0
> libz.so
> libhdf5_fortran.a libhdf5_hl_cpp.so.11.1.0 libhdf5.settings
> libz.so.1
> libhdf5_fortran.so libhdf5hl_fortran.a libhdf5.so
> libz.so.1.2.5
> libhdf5_fortran.so.10 libhdf5hl_fortran.so libhdf5.so.10
>
> root@cluster:netcdf-4.4.1# echo $LD_LIBRARY_PATH
> /export/apps/computer/hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib
> root@cluster:netcdf-4.4.1# ./configure
> --with-hd5=/export/apps/computer/hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared
> ...
> ...
> checking for library containing H5Fflush... no
> configure: error: Can't find or link to the hdf5 library. Use
> --disable-netcdf-4, or see config.log for errors.
>
>
>
>
> I really don't understand why it is still giving me the error.
> Thanks for any suggestion.
>
>
> Regards,
> Mahmood
>
>
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