Hello Thiago!
I suggest you to always golf your commands with && instead of ;
(semicolon). This will ensure the next command won't run if the previous
failed. i.e.:
make && sudo make install && sudo make check-install
So you may be having failure during make or make install, yet you're
trying to make check. I see all exit status on your test run is 139
(segmentation fault).
If a failure is happening during `make`, which may be the case, then the
two log files you provided wouldn't have meaningful information. At
least I'm not familiar with all tests resulting in segmentation fault
(instead of file not found or something else).
- fabricio
On 9/27/2017 9:56 PM, Thiago V. dos Santos wrote:
Dear list members,
I am trying to build the netCDF-C libraries v4.5.0 RC2 with parallel
support on a Quadcore Macbook Pro with 16GB RAM running macOS Sierra
(OS X 10.12.6).
I am using MacPorts to install both GCC 7.0 and MPICH v3.2.
I then compiled udunits, zlib, PnetCDF and HDF5 all successfully, with
all tests passing. Particularly, this is how I built HDF5 v1.10.1:
# define environment variables
export DYLD_LIBRARY_PATH=/usr/local/cesm-software/lib
./configure FC=mpif90 CC=mpicc CXX=mpicxx
--prefix=/usr/local/cesm-software --enable-parallel
--with-zlib=/usr/local/cesm-software
make; sudo make install; sudo make check-install
As I mentioned before, all HDF5 tests finished successfully. And this
is how I am trying to build the ncetcdf-c libraries:
# define environment variables
export UTILDIR="/usr/local/cesm-software"
./configure CC=mpicc FC=mpif90 F77=mpif90
--prefix=/usr/local/cesm-software --disable-dap --disable-shared
--enable-pnetcdf --enable-parallel-tests CPPFLAGS="-DgFortran
-I${UTILDIR}/include" LDFLAGS="-L${UTILDIR}/lib" LIBS="-lhdf5_hl
-lhdf5 -lz -ldl -lm"
make; sudo make install; sudo make check
The configure and make commands apparently finish successfully, but
all 27 make-check tests fail. Please see both config.log and
test-suite.log attached to this message.
Based on the information I provided, does anyone have any tips on what
can be causing the tests to fail and how to fix it?
Thanks in advance,
Thiago.
--
/Thiago Veloso dos Santos/
/PhD student/
/Land and Atmospheric Science/
/University of Minnesota/
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