First, run md5sum on the netcdf file that doesn't work and compare it to
the md5sum on the machine/file that does work. The file could be damaged.
ncview scans through the file, so it may be encountering an error that the
other programs have not gotten to yet.
But the most likely thing is that the netcdf library on the machine that is
having the problem was compiled without options supporting the kind of
netcdf file you are trying to view. You might try running nc-config --all
on both the machine that works and the machine where it doesn't work and
comparing the output.
Regards,
--Dave
On Wed, May 8, 2019 at 12:42 AM LSL <lslrsgis@xxxxxxxxxx> wrote:
> Dear netCDF community,
>
> I am writing for a question on netcdf. I can not open netcdf ouput of WRF
> model using ncview, but I can read it through panoply and NCL scripts.
>
>
> -------------------------------------------------------------------------------------------------------------------------------------------
>
> lsl@lsl-Vostro-3668:~/Downloads/GLASS_RESAMPLE_SUBSET$ ncview wrfinput_d01
> Ncview 2.1.8 David W. Pierce 8 March 2017
> http://meteora.ucsd.edu:80/~pierce/ncvi ... _page.html
> <http://meteora.ucsd.edu:80/~pierce/ncview_home_page.html>
> Copyright (C) 1993 through 2015, David W. Pierce
> Ncview comes with ABSOLUTELY NO WARRANTY; for details type `ncview -w'.
> This is free software licensed under the Gnu General Public License
> version 3; type `ncview -c' for redistribution details.
>
> netcdf_fi_get_data: error on nc_get_vara_float call
> cdfid=65536 variable=XLONG
> start, count:
> [0]: 0 1
> [1]: 0 62
> [2]: 0 91
> NetCDF: HDF error
>
>
> -------------------------------------------------------------------------------------------------------------------------------------------
>
> Moreover, when I tried to ncview this file on my laptop (another PC with
> Ubuntu System, and ncview installed), it works. I guess that it might
> caused by my netcdf configuration, which passed into wrf output.
>
> Any indication is appreciated. Thanks!
>
> Best regards,
>
> LSL
>
> P.S. the libraries manually installed are: hdf5-1.10.4 netcdf-4.6.1
> netcdf-fortran-4.4.4
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--
David W. Pierce
Division of Climate, Atmospheric Science, and Physical Oceanography
Mail Stop 0230
Scripps Institution of Oceanography, La Jolla, California, USA
(858) 534-8276 (voice) / (858) 534-8561 (fax) dpierce@xxxxxxxx
