I'm trying to open an aggregation using opendap ASCII, but I get the
following error:
Error {
code = 500;
message = "readAgg SASS/SIO/SIOPier/2012";
};
I'm aggregating each month's netcdf file into a single year. Each nc
file is about 1-2 Mbytes. The error only shows up on the 2012
aggregations though and if I try to open each individual netcdf file, I
get no error. I'm not sure if it matters, but I have a crontab
regenerating the current month's nc file every 4 minutes.
The log file gives me this:
2012-10-25T10:39:25.700 -0700 [ 251307517][ 196]
ERRO2012-10-25T10:39:25.700 -0700 [ 251307517][ 196] ERROR -
ucar.nc2.ncml.Aggregation - readAgg SASS/SIO/SIOPier/2012
ucar.ma2.InvalidRangeException: Bad range ending value at index 0 == 7904
at ucar.ma2.Index.section(Index.java:240)
at ucar.ma2.Array.section(Array.java:530)
at
ucar.nc2.ncml.AggregationOuterDimension$CacheVar.read(AggregationOuterDimension.java:856)
at
ucar.nc2.ncml.AggregationOuterDimension.reallyRead(AggregationOuterDimension.java:331)
at ucar.nc2.dataset.VariableDS._read(VariableDS.java:496)
at ucar.nc2.dataset.VariableDS._read(VariableDS.java:520)
at ucar.nc2.Variable.read(Variable.java:658)
at ucar.nc2.Variable.read(Variable.java:632)
at thredds.server.opendap.NcSDArray.read(NcSDArray.java:115)
at opendap.servlet.AsciiWriter.writeAsc(AsciiWriter.java:95)
at opendap.servlet.AsciiWriter.toASCII(AsciiWriter.java:56)
at
thredds.server.opendap.OpendapServlet.doGetASC(OpendapServlet.java:324)
at thredds.server.opendap.OpendapServlet.doGet(OpendapServlet.java:225)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:621)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at thredds.servlet.filter.CookieFilter.doFilter(CookieFilter.java:54)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
thredds.servlet.filter.RequestQueryFilter.doFilter(RequestQueryFilter.java:122)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
thredds.servlet.filter.RequestPathFilter.doFilter(RequestPathFilter.java:105)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
at org.apache.coyote.ajp.AjpProcessor.process(AjpProcessor.java:200)
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:307)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
2012-10-25T10:39:25.701 -0700 [ 251307518][ 196] ERROR -
thredds.server.opendap.OpendapServlet - path= /SASS/SIO/SIOPier/2012.ascii
java.lang.IllegalArgumentException: readAgg SASS/SIO/SIOPier/2012
at
ucar.nc2.ncml.AggregationOuterDimension.reallyRead(AggregationOuterDimension.java:336)
at ucar.nc2.dataset.VariableDS._read(VariableDS.java:496)
at ucar.nc2.dataset.VariableDS._read(VariableDS.java:520)
at ucar.nc2.Variable.read(Variable.java:658)
at ucar.nc2.Variable.read(Variable.java:632)
at thredds.server.opendap.NcSDArray.read(NcSDArray.java:115)
at opendap.servlet.AsciiWriter.writeAsc(AsciiWriter.java:95)
at opendap.servlet.AsciiWriter.toASCII(AsciiWriter.java:56)
at
thredds.server.opendap.OpendapServlet.doGetASC(OpendapServlet.java:324)
at thredds.server.opendap.OpendapServlet.doGet(OpendapServlet.java:225)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:621)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at thredds.servlet.filter.CookieFilter.doFilter(CookieFilter.java:54)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
thredds.servlet.filter.RequestQueryFilter.doFilter(RequestQueryFilter.java:122)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
thredds.servlet.filter.RequestPathFilter.doFilter(RequestPathFilter.java:105)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
at org.apache.coyote.ajp.AjpProcessor.process(AjpProcessor.java:200)
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:307)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
Caused by: ucar.ma2.InvalidRangeException: Bad range ending value at
index 0 == 7904
at ucar.ma2.Index.section(Index.java:240)
at ucar.ma2.Array.section(Array.java:530)
at
ucar.nc2.ncml.AggregationOuterDimension$CacheVar.read(AggregationOuterDimension.java:856)
at
ucar.nc2.ncml.AggregationOuterDimension.reallyRead(AggregationOuterDimension.java:331)
... 36 more
2012-10-25T10:39:25.702 -0700 [ 251307519][ 196] INFO -
thredds.server.opendap.OpendapServlet - Request Completed - 500 - -1 - 3
The link to the server is at
http://sccoos-obs0.ucsd.edu/thredds/catalog-AutomatedShoreStations.html?dataset=SASS/SIO/SIOPier/2012
Here's a snippet of the catalog file with 2012 and 2011:
<dataset name="SIO, SIOPier, 2012" ID="SASS/SIO/SIOPier/2012"
urlPath="SASS/SIO/SIOPier/2012" >
<metadata inherited="true">
<documentation type="summary">Automated Shore Stations - SIO -
SIOPier - 2012</documentation>
</metadata>
<netcdf
xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2";>
<aggregation dimName="datetime" type="joinExisting"
recheckEvery="10 min">
<scan location="/data/InSitu/SASS/data/SIO/SIOPier/"
regExp="SASS\.\w+\.\w+\.2012([0-9]{2})\.dat\.nc$"
subdirs="false" />
</aggregation>
</netcdf>
</dataset>
<dataset name="SIO, SIOPier, 2011" ID="SASS/SIO/SIOPier/2011"
urlPath="SASS/SIO/SIOPier/2011" >
<metadata inherited="true">
<documentation type="summary">Automated Shore Stations - SIO -
SIOPier - 2011</documentation>
</metadata>
<netcdf
xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2";>
<aggregation dimName="datetime" type="joinExisting"
recheckEvery="10 min">
<scan location="/data/InSitu/SASS/data/SIO/SIOPier/"
regExp="SASS\.\w+\.\w+\.2011([0-9]{2})\.dat\.nc$"
subdirs="false" />
</aggregation>
</netcdf>
</dataset>
