Re: [thredds] ncml aggregation 200 times slower in thredds 4.6.1

  • To: Heiko Klein <heiko.klein@xxxxxx>
  • Subject: Re: [thredds] ncml aggregation 200 times slower in thredds 4.6.1
  • From: John Caron <caron@xxxxxxxx>
  • Date: Wed, 20 May 2015 10:41:24 -0600
ok, we'll see if we can reproduce the problem.



On Wed, May 20, 2015 at 10:25 AM, Heiko Klein <heiko.klein@xxxxxx> wrote:

> Hi John,
>
> in 4.6.1, request-time stays at ~20s each time I try it. Only in 4.3.23 I
> see a huge perfomance-gain (from 7s to 0.1s) after the first fetch.
>
> Heiko
>
> ----- Original Message -----
> > Hi Heiko:
> >
> > Can you see whether the second time you access the dataset, if the times
> > are fast again?
> >
> > thanks,
> > John
> >
> > On Wed, May 20, 2015 at 2:07 AM, Heiko Klein <Heiko.Klein@xxxxxx> wrote:
> >
> > > Hi,
> > >
> > > I have some performance problems after upgrading to thredds 4.6.1.
> > >
> > > I'm aggregating a large dataset with a joinExisting aggregation.
> Reading
> > > the metadata from the aggregation took, with thredds 4.3.23, about 0.1s
> > > (first time up to 7s). After upgrading to 4.6.1, the same request
> takes 20s
> > > (second time, first time not measured) and is unusable slow. A
> 'ncview' of
> > > the aggregated dataset is no longer possible.
> > >
> > > Suspecting some caching problems, I followed the guidelines in
> > >
> http://www.unidata.ucar.edu/software/thredds/current/tds/reference/ThreddsConfigXMLFile.html
> > > The aggregation-cache contains two files
> > >
> > > $ ls -l file-lustre-mnt-heikok-FAUNA-mbr000_all.ncml
> > > lustre/mnt/heikok/FAUNA/mbr000_all.ncml
> > > -rw-r--r-- 1 tomcat7 tomcat7 74339 May 20 09:43
> > > file-lustre-mnt-heikok-FAUNA-mbr000_all.ncml
> > > -rw-r--r-- 1 tomcat7 tomcat7 74131 May 20 10:01
> > > lustre/mnt/heikok/FAUNA/mbr000_all.ncml
> > >
> > > (I guess the first one is thredds 4.3, while the second one is thredds
> 4.6)
> > >
> > >
> > > The ncml-file is:
> > >
> > > <netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2
> ">
> > >   <aggregation dimName="time" type="joinExisting">
> > >     <scan location="." regExp=".*snapMet000\.nc$" subdirs="true"/>
> > >   </aggregation>
> > > </netcdf>
> > >
> > >
> > > It is aggregating 4575 files, each about 1.3G.
> > >
> > >
> > > The requests according to the logs are:
> > > 2015-05-20T09:49:17.111 +0200 [    372240][     281] INFO  -
> > > threddsServlet - Remote host: 157.249.113.42 - Request: "GET
> > > /thredds/dodsC/lustreMnt/heikok/FAUNA/mbr000_all.ncml.dds HTTP/1.1"
> > > 2015-05-20T09:49:17.116 +0200 [    372245][     281] INFO  -
> > > threddsServlet - Request Completed - 200 - -1 - 5
> > > 2015-05-20T09:49:17.117 +0200 [    372246][     282] INFO  -
> > > threddsServlet - Remote host: 157.249.113.42 - Request: "GET
> > > /thredds/dodsC/lustreMnt/heikok/FAUNA/mbr000_all.ncml.das HTTP/1.1"
> > > 2015-05-20T09:49:17.131 +0200 [    372260][     282] INFO  -
> > > threddsServlet - Request Completed - 200 - -1 - 14
> > > 2015-05-20T09:49:17.134 +0200 [    372263][     283] INFO  -
> > > threddsServlet - Remote host: 157.249.113.42 - Request: "GET
> > > /thredds/dodsC/lustreMnt/heikok/FAUNA/mbr000_all.ncml.dds HTTP/1.1"
> > > 2015-05-20T09:49:17.138 +0200 [    372267][     283] INFO  -
> > > threddsServlet - Request Completed - 200 - -1 - 4
> > >
> > >
> > > Best regards,
> > >
> > > Heiko
> > >
> > >
> > > --
> > > Dr. Heiko Klein                   Norwegian Meteorological Institute
> > > Tel. + 47 22 96 32 58             P.O. Box 43 Blindern
> > > http://www.met.no                 0313 Oslo NORWAY
> > >
> > > _______________________________________________
> > > thredds mailing list
> > > thredds@xxxxxxxxxxxxxxxx
> > > For list information or to unsubscribe,  visit:
> > > http://www.unidata.ucar.edu/mailing_lists/
> > >
> >
>
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