Hi Christian,
Please find some FTP link in the end of this email, to download some netCDF4
files we've used here for the tests. I've also added part of catalina.out, the
java_opts used, and the Thredds configuration (simple joinExisting aggregation).
Note that it's only when you request netCDF4 as output that we have an error.
Best regards,
Tony
Hi Tony,
Can you provide an example of the NetCDF-4 input file so that we can recreate
the problem locally?
Thanks,
Christian
On Thu, Dec 10, 2015 at 8:29 AM, Jolibois Tony wrote:
Hi Thredds team,
We’re currently testing TDS netCDF Subset Service, its performance,
robustness.. These tests include different netCDF format, to study the impact
on performance and robustness with different compression levels.
To study this impact, we run 4 scenarios for input/output data files for TDS
NCSS.
Input netCDF3 => output netCDF3
Input netCDF4 => output netCDF3
Input netCDF3 => output netCDF4
Input netCDF4 => output netCDF4
We’re facing an error only with the 4th scenario, netCDF4 => netCDF4 (NCSS REST
parameter &accept=netcdf4).
java.io.IOException: -101: NetCDF: HDF error
at ucar.nc2.jni.netcdf.Nc4Iosp.writeData(Nc4Iosp.java:2821)
~[netcdf4-4.6.3.jar:4.6.3]
at ucar.nc2.jni.netcdf.Nc4Iosp.writeData(Nc4Iosp.java:2729)
~[netcdf4-4.6.3.jar:4.6.3]
at ucar.nc2.NetcdfFileWriter.write(NetcdfFileWriter.java:953)
~[cdm-4.6.3.jar:4.6.3]
at ucar.nc2.NetcdfFileWriter.write(NetcdfFileWriter.java:937)
~[cdm-4.6.3.jar:4.6.3]
at ucar.nc2.FileWriter2.copyAll(FileWriter2.java:427)
~[cdm-4.6.3.jar:4.6.3]
at ucar.nc2.FileWriter2.copyVarData(FileWriter2.java:380)
~[cdm-4.6.3.jar:4.6.3]
at
ucar.nc2.dt.grid.CFGridWriter2.writeOrTestSize(CFGridWriter2.java:244)
~[cdm-4.6.3.jar:4.6.3]
at ucar.nc2.dt.grid.CFGridWriter2.writeFile(CFGridWriter2.java:112)
~[cdm-4.6.3.jar:4.6.3]
at
thredds.server.ncss.controller.GridResponder.writeGridFile(GridResponder.java:250)
~[classes/:4.6.3]
at
thredds.server.ncss.controller.GridResponder.writeLatLonSubset(GridResponder.java:166)
~[classes/:4.6.3]
at
thredds.server.ncss.controller.GridResponder.getResponseFile(GridResponder.java:97)
~[classes/:4.6.3]
at
thredds.server.ncss.controller.NcssController.handleRequestGrid(NcssController.java:175)
~[classes/:4.6.3]
at
thredds.server.ncss.controller.NcssController.handleRequest(NcssController.java:140)
~[classes/:4.6.3]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
~[?:1.8.0_65]
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
~[?:1.8.0_65]
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
~[?:1.8.0_65]
at java.lang.reflect.Method.invoke(Method.java:497) ~[?:1.8.0_65]
The error comes from netcdf4 java library used inside TDS version 4.6.3 (latest
stable version).
The error appears only if we have a geographical subset (works with no subset
or temporal aggregation).
Different NetCDF-4 input files have been tested:
• original Netcdf3 files converted with the command nccopy –k4 –d3
input.nc output.nc4
• original Netcdf4 generated with python library
For information on software versions:
misgw-qt-new:/home/misgw# ls -ltr
total 246300
-rw-r--r-- 1 root root 9130958 oct 7 21:09 apache-tomcat-8.0.28.tar.gz
-rw-rw-r-- 1 misgw misgw 181260798 nov 9 10:48 jdk-8u65-linux-x64.gz
-rw-r--r-- 1 root root 61808104 nov 9 11:03 thredds_4.6.3.war
Thanks for the support.
Tony Jolibois
-
Tony Jolibois
Product Dissemination Services
Space Oceanography
+33 5 61 39 37 97
The following files are attached to this message:
- netCDF4.zip (13 MB)
- catalina.out (6 KB)
- java_opts.sh (1012.0 B)
- m_LR_OBS_nc4.xml (2 KB)
- m_Surcouf_C4.xml (2 KB)
Please click on the following link to download the attachments:
http://ftp-mail.cls.fr/message/XY07Uo3bGqdx38DKHGNgyD
The attachments are available until: Friday, 18 December
Message ID: XY07Uo3
