Hi Roy, Ed, Ian and Steve,
Thanks for all support and good ideas. Problem solved !!! :^)
g95 -O5 -o pom.exe pom2k.f areas_masks.o advave.o advq.o advt1.o
advt2.o advct.o advu.o advv.o baropg.o bcond.o bcondorl.o box.o dens.o
depth.o file2ic.o findpsi.o printall.o profq.o proft.o profu.o profv.o
prxy.o prxyz.o prxz.o pryz.o seamount.o slpmax.o smol_adif.o vertvl.o
def_var_netcdf.o handle_netcdf_error.o write_netcdf.o
-L/sw/lib/netcdf-g95/lib -lnetcdff -lnetcdf
Apparently I need to give the path to -L/sw/lib/netcdf-g95/lib and not
/sw/lib/. It also only works if I use both -lnetcdff and -lnetcdf, as
Roy just mentioned.
Many thanks,
Felipe
On Jan 28, 2008 1:49 PM, Roy Mendelssohn <Roy.Mendelssohn@xxxxxxxx> wrote:
> I think you have the netcdf that either doesn't do fortran or uses
> f2c. If you want to use g95 or gfortran fink has separate libs as
> follows:
>
> tcsh-% fink list netcdf
> Information about 6701 packages read in 1 seconds.
> i netcdf 3.6.2-6 Interface &
> lib for array-based data access
> netcdf-absoft 3.5.1-1014 Lib for array-
> oriented data & interface to Absoft Fortran
> netcdf-absoft-bin 3.5.1-1014 Lib for array-
> oriented data & interface to Absoft Fortran
> netcdf-absoft-shlibs 3.5.1-1014 Lib for array-
> oriented data & interface to Absoft Fortran
> i netcdf-bin 3.6.2-6 Interface &
> lib for array-based data access
> netcdf-g95 3.6.2-6 Interface &
> lib for array-based data access
> netcdf-g95-shlibs 3.6.2-6 Interface &
> lib for array-based data access
> i netcdf-gfortran 3.6.2-7 Interface &
> lib for array-based data access
> i netcdf-gfortran-shlibs 3.6.2-7 Interface &
> lib for array-based data access
> netcdf-perl-pm586 1.2.3-6 Perl extension
> for netCDF datasets access
> i netcdf-shlibs 3.6.2-6 Interface &
> lib for array-based data access
>
> so if you want to use g95 first run
>
> fink install netcdf-g95 netcdf-g95-shlibs
>
> make sure you link in the resulting libs and then things should work
> better.
>
> -Roy M.
>
>
>
> On Jan 28, 2008, at 10:38 AM, Felipe Pimenta wrote:
>
> > Hi Steve,
> >
> > The command: nm /sw/lib/libnetcdf.a | grep nf_def_var resulted in
> > nothing (no expressions such as nf_def_var) .
> >
> > The result of "nm /sw/lib/libnetcdf.a > ~/Desktop/output.txt" it's
> > included as attachment to this message. Here goes a sample. There is a
> > _nc_def_var:
> >
> > U _nc_cktype
> > 00000b00 T _nc_def_var
> > U _nc_inq_natts
> > 00000db0 T _nc_inq_var
> > 00001060 T _nc_inq_vardimid
> > 00000d40 T _nc_inq_varid
> >
> > Thanks,
> >
> > Felipe
> >
> >
> > On Jan 28, 2008 1:00 PM, Steve Cousins <cousins@xxxxxxxxxxxxxx> wrote:
> >>
> >> On Mon, 28 Jan 2008, felipe@xxxxxxxx wrote:
> >>
> >>> Hi Steve,
> >>>
> >>> No, I don't have a /sw/lib/libnetcdff.a. This is what I have at /
> >>> sw/lib :
> >>>
> >>> ls /sw/lib/libnet*
> >>> /sw/lib/libnetcdf.3.dylib /sw/lib/libnetcdf.dylib
> >>> /sw/lib/libnetcdf_c++.4.dylib /sw/lib/libnetcdf_c++.la
> >>> /sw/lib/libnetcdf.4.dylib /sw/lib/libnetcdf.la
> >>> /sw/lib/libnetcdf_c++.a
> >>> /sw/lib/libnetcdf.a /sw/lib/libnetcdf_c++.3.dylib
> >>> /sw/lib/libnetcdf_c++.dylib
> >>
> >> Hi Felipe,
> >>
> >> Ok. How about running:
> >>
> >> nm /sw/lib/libnetcdf.a | grep nf_def_var
> >>
> >> to see if the symbol is in there at all. Perhaps it wasn't
> >> compiled with
> >> the Fortran code? Or just do:
> >>
> >> nm /sw/lib/libnetcdf.a
> >>
> >> to see what _is_ in there and what the underscoring is like.
> >>
> >> Good luck,
> >>
> >> Steve
> >>
> >>
> >>
> >>> Thanks for your suggestion,
> >>>
> >>> Felipe
> >>>
> >>>
> >>>
> >>> On Jan 28, 2008 12:39 PM, Steve Cousins <cousins@xxxxxxxxxxxxxx>
> >>> wrote:
> >>>>>
> >>
> >>>>> Is there a /sw/lib/libnetcdff.a file (two f's at the end)? I've
> >>>>> run into
> >>>>> this where code that used to work now needs to add this library
> >>>>> in to get
> >>>>> the Fortran symbols. FWIW, I vote that this "feature" gets
> >>>>> removed. It is
> >>>>> a real pain.
> >>>>>
> >>>>> I hope this helps.
> >>>>>
> >>>>> Steve
> >>>>> __________________________________________________________________
> >>>>> ____
> >>>>> Steve Cousins, Ocean Modeling Group Email:
> >>>>> cousins@xxxxxxxxxxxxxx
> >>>>> Marine Sciences, 452 Aubert Hall http://
> >>>>> rocky.umeoce.maine.edu
> >>>>> Univ. of Maine, Orono, ME 04469 Phone: (207) 581-4302
> >>>>>
> >>>>>
> >>>>> On Mon, 28 Jan 2008, Felipe Pimenta wrote:
> >>>>>
> >>>>>> Hi Roy,
> >>>>>>
> >>>>>> I did it with "-L/sw/lib/ -lnetcdf" and also trying with and
> >>>>>> without
> >>>>>> the -fno-second-underscore and -fno-underscoring flags. The
> >>>>>> result is
> >>>>>> still an error:
> >>>>>>
> >>>>>> g95 -O5 -o pom.exe pom2k.f areas_masks.o advave.o advq.o
> >>>>>> advt1.o
> >>>>>> advt2.o advct.o advu.o advv.o baropg.o bcond.o bcondorl.o
> >>>>>> box.o dens.o
> >>>>>> depth.o file2ic.o findpsi.o printall.o profq.o proft.o profu.o
> >>>>>> profv.o
> >>>>>> prxy.o prxyz.o prxz.o pryz.o seamount.o slpmax.o smol_adif.o
> >>>>>> vertvl.o
> >>>>>> def_var_netcdf.o handle_netcdf_error.o write_netcdf.o -L/sw/lib/
> >>>>>> -lnetcdf
> >>>>>> ld: Undefined symbols:
> >>>>>> _nf_def_var__
> >>>>>> _nf_put_att_text__
> >>>>>> _nf_strerror__
> >>>>>> _nccre_
> >>>>>> ...
> >>>>>> ... (long list...)
> >>>>>> ...
> >>>>>> _nf_set_fill__
> >>>>>> _nf_sync__
> >>>>>> make: *** [pom.exe] Error 1
> >>>>>>
> >>>>>> Thanks,
> >>>>>>
> >>>>>> Felipe
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> On Jan 28, 2008 12:38 PM, Roy Mendelssohn
> >>>>>> <Roy.Mendelssohn@xxxxxxxx> wrote:
> >>>>>>> Okay, I looked more closely at your command line. You have
> >>>>>>>
> >>>>>>> "-L/sw/lib/libnetcdf.a -lnetcdf"
> >>>>>>>
> >>>>>>> it should be
> >>>>>>>
> >>>>>>> "-L/sw/lib/ -lnetcdf"
> >>>>>>>
> >>>>>>> Give that a try.
> >>>>>>>
> >>>>>>> -Roy M.
> >>>>>>>
> >>>>>>>
> >>>>>>> On Jan 28, 2008, at 8:51 AM, Felipe Pimenta wrote:
> >>>>>>>
> >>>>>>>> Dear Ed Hartnett and Roy Mendelssohn,
> >>>>>>>>
> >>>>>>>> Thanks for your email. I tried to compile the code with the
> >>>>>>>> following flags:
> >>>>>>>>
> >>>>>>>> -fno-second-underscore and
> >>>>>>>> -fno-underscoring
> >>>>>>>>
> >>>>>>>> Together, separated and with g95 and g77. The problem still
> >>>>>>>> occurs. I
> >>>>>>>> also checked the packages I have from Fink:
> >>>>>>>>
> >>>>>>>> g95 0.90-3 Another GNU Fortran 1995 compiler
> >>>>>>>> netcdf-g95 3.6.2-6 Interface & lib for array-based
> >>>>>>>> data access
> >>>>>>>>
> >>>>>>>> I've rebuild them from source with Fink, but I could not
> >>>>>>>> solve the
> >>>>>>>> problem.
> >>>>>>>>
> >>>>>>>> Thanks,
> >>>>>>>>
> >>>>>>>> Felipe
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> On 1/26/08, Roy Mendelssohn <Roy.Mendelssohn@xxxxxxxx> wrote:
> >>>>>>>>> Use whatever is he option that suppresses adding an
> >>>>>>>>> underscore to
> >>>>>>>>> subroutine names.
> >>>>>>>>>
> >>>>>>>>> -Roy M.
> >>>>>>>>>
> >>>>>>>>> On Jan 26, 2008, at 6:16 AM, Felipe Pimenta wrote:
> >>>>>>>>>
> >>>>>>>>>> Hi,
> >>>>>>>>>>
> >>>>>>>>>> I currently upgraded the netcdf of my mac power pc OS X
> >>>>>>>>>> 10.4.11 to
> >>>>>>>>>> netcdf-g95 using fink (I will have to work with g95 in a near
> >>>>>>>>>> future).
> >>>>>>>>>
> >>>>>>>>>> However, a code that I used to run on g77 with netcdf not
> >>>>>>>>>> is not
> >>>>>>>>>> compiling anymore. I've changed the library file path
> >>>>>>>>>> inside the
> >>>>>>>>>> fortran subroutine to:
> >>>>>>>>>>
> >>>>>>>>>> include '/sw/lib/netcdf-g95/include/netcdf.inc'
> >>>>>>>>>>
> >>>>>>>>>> but the following problem occurs:
> >>>>>>>>>>
> >>>>>>>>>> g77 -O5 -o pom.exe pom2k.f areas_masks.o advave.o advq.o
> >>>>>>>>>> advt1.o
> >>>>>>>>>> advt2.o advct.o advu.o advv.o baropg.o bcond.o bcondorl.o
> >>>>>>>>>> box.o
> >>>>>>>>>> dens.o
> >>>>>>>>>> depth.o file2ic.o findpsi.o printall.o profq.o proft.o
> >>>>>>>>>> profu.o
> >>>>>>>>>> profv.o
> >>>>>>>>>> prxy.o prxyz.o prxz.o pryz.o seamount.o slpmax.o smol_adif.o
> >>>>>>>>>> vertvl.o
> >>>>>>>>>> def_var_netcdf.o handle_netcdf_error.o write_netcdf.o
> >>>>>>>>>> -L/sw/lib/libnetcdf.a -lnetcdf
> >>>>>>>>>> /usr/bin/ld: Undefined symbols:
> >>>>>>>>>> _nf_def_var__
> >>>>>>>>>> _nf_put_att_text__
> >>>>>>>>>> _nf_strerror__
> >>>>>>>>>> _nf_close__
> >>>>>>>>>> _nf_create__
> >>>>>>>>>> _nf_def_dim__
> >>>>>>>>>> _nf_enddef__
> >>>>>>>>>> _nf_put_var_real__
> >>>>>>>>>> _nf_put_vara_real__
> >>>>>>>>>> collect2: ld returned 1 exit status
> >>>>>>>>>> make: *** [pom.exe] Error 1
> >>>>>>>>>>
> >>>>>>>>>> I also tried to compile the code with g95, without
> >>>>>>>>>> success. Does
> >>>>>>>>>> anybody have any suggestions?
> >>>>>>>>>>
> >>>>>>>>>> Thanks a lot,
> >>>>>>>>>>
> >>>>>>>>>> Felipe
> >>>>>>>>>> _______________________________________________
> >>>>>>>>>> netcdfgroup mailing list
> >>>>>>>>>> netcdfgroup@xxxxxxxxxxxxxxxx
> >>>>>>>>>> For list information or to unsubscribe, visit: http://
> >>>>>>>>>> www.unidata.ucar.edu/mailing_lists/
> >>>>>>>>>
> >>>>>>>>> **********************
> >>>>>>>>> "The contents of this message do not reflect any position
> >>>>>>>>> of the U.S.
> >>>>>>>>> Government or NOAA."
> >>>>>>>>> **********************
> >>>>>>>>> Roy Mendelssohn
> >>>>>>>>> Supervisory Operations Research Analyst
> >>>>>>>>> NOAA/NMFS
> >>>>>>>>> Environmental Research Division
> >>>>>>>>> Southwest Fisheries Science Center
> >>>>>>>>> 1352 Lighthouse Avenue
> >>>>>>>>> Pacific Grove, CA 93950-2097
> >>>>>>>>>
> >>>>>>>>> e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
> >>>>>>>>> voice: (831)-648-9029
> >>>>>>>>> fax: (831)-648-8440
> >>>>>>>>> www: http://www.pfeg.noaa.gov/
> >>>>>>>>>
> >>>>>>>>> "Old age and treachery will overcome youth and skill."
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>
> >>>>>>>>>>>>> --
> >>>>>>>> =================================
> >>>>>>>> Felipe Mendonca Pimenta
> >>>>>>>> College of Marine and Earth Studies
> >>>>>>>> University of Delaware, 211 Robinson Hall
> >>>>>>>> Newark, DE, 19716-3501 USA
> >>>>>>>> Phone: (302) 831-2848, felipe@xxxxxxxx
> >>>>>>>> =================================
> >>>>>>>
> >>>>>>> **********************
> >>>>>>> "The contents of this message do not reflect any position of
> >>>>>>> the U.S.
> >>>>>>> Government or NOAA."
> >>>>>>> **********************
> >>>>>>> Roy Mendelssohn
> >>>>>>> Supervisory Operations Research Analyst
> >>>>>>> NOAA/NMFS
> >>>>>>> Environmental Research Division
> >>>>>>> Southwest Fisheries Science Center
> >>>>>>> 1352 Lighthouse Avenue
> >>>>>>> Pacific Grove, CA 93950-2097
> >>>>>>>
> >>>>>>> e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
> >>>>>>> voice: (831)-648-9029
> >>>>>>> fax: (831)-648-8440
> >>>>>>> www: http://www.pfeg.noaa.gov/
> >>>>>>>
> >>>>>>> "Old age and treachery will overcome youth and skill."
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> --
> >>>>>> =================================
> >>>>>> Felipe Mendonca Pimenta
> >>>>>> College of Marine and Earth Studies
> >>>>>> University of Delaware, 211 Robinson Hall
> >>>>>> Newark, DE, 19716-3501 USA
> >>>>>> Phone: (302) 831-2848, felipe@xxxxxxxx
> >>>>>> =================================
> >>>>>> _______________________________________________
> >>>>>> netcdfgroup mailing list
> >>>>>> netcdfgroup@xxxxxxxxxxxxxxxx
> >>>>>> For list information or to unsubscribe, visit: http://
> >>>>>> www.unidata.ucar.edu/mailing_lists/
> >>>>>>
> >>>>>
> >>>>
> >>>>
> >>>>
> >>> --
> >>> =================================
> >>> Felipe Mendonca Pimenta
> >>> College of Marine and Earth Studies
> >>> University of Delaware, 211 Robinson Hall
> >>> Newark, DE, 19716-3501 USA
> >>> Phone: (302) 831-2848, felipe@xxxxxxxx
> >>> =================================
> >>>
> >>
> >
> >
> >
> > --
> > =================================
> > Felipe Mendonca Pimenta
> > College of Marine and Earth Studies
> > University of Delaware, 211 Robinson Hall
> > Newark, DE, 19716-3501 USA
> > Phone: (302) 831-2848, felipe@xxxxxxxx
> > =================================<output.txt>_________________________
>
> > ______________________
> > netcdfgroup mailing list
> > netcdfgroup@xxxxxxxxxxxxxxxx
> > For list information or to unsubscribe, visit: http://
> > www.unidata.ucar.edu/mailing_lists/
>
> **********************
> "The contents of this message do not reflect any position of the U.S.
> Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> 1352 Lighthouse Avenue
> Pacific Grove, CA 93950-2097
>
> e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
> voice: (831)-648-9029
> fax: (831)-648-8440
> www: http://www.pfeg.noaa.gov/
>
> "Old age and treachery will overcome youth and skill."
>
>
>
>
--
=================================
Felipe Mendonca Pimenta
College of Marine and Earth Studies
University of Delaware, 211 Robinson Hall
Newark, DE, 19716-3501 USA
Phone: (302) 831-2848, felipe@xxxxxxxx
=================================
