Here are the environment variables I had to set, the configure command
I used, and one additional change to the nco config.h file to get it
to compile on CentOS 64bit (gcc 4.1.2). I should add that some of
these commands are tailored to the way I built hdf5 and netcdf4. It
seems so kludgey, but it worked. I haven't tried with nco-4.0.1.
setenv CPPFLAGS -I/path_to_netcdf-4.1.1/include
setenv NETCDF4_ROOT /path_to_netcdf-4.1.1
setenv HDF5_LIB_DIR /path_to_hdf5-1.8.4-patch1
setenv LIBS "-L/path_to_netcdf-4.1.1-rc2/lib -lnetcdf \
-L/path_to_hdf5-1.8.4-patch1/lib -lhdf5_hl -lhdf5 \
-L/path_to_zlib/lib -lz -lm \
/path_to_szip-2.1/lib/libsz.a \
/path_to_curl-7.19.6/lib/libcurl.a \
-lrt -lz"
./configure --prefix=/path_to_nco-4.0.0 --enable-netcdf4 --disable-
shared --enable-static
Also added:
#define HAVE_NETCDF4_H 1
to config.h
I hope this helps!
--Jennifer
On May 24, 2010, at 2:22 PM, David Pierce wrote:
Hi Gary,
I ran into the multiple definitions problem as well. Not wanting to
spend
time messing with it, I simply commented out the redundant
definitions in
the nco source code (the make error messages show the file and line
numbers) and that worked. This is on a Ubundu 8.04 LTS x64 system.
Regards,
--Dave
Gary Strand wrote:
I'm having significant problems getting nco-4.0.1 and cdo-1.4.4 to
build against netCDF-4.1.1/hdf5-1.8.4patch1 on a reasonably generic
Linux 64-bit system.
'nco' reports many multiple definitions during 'make'; 'cdo' fails on
'configure' because it can't find 'nc_open'.
Does anyone have any hints/suggestions as to get past these problems?
Thanks!
Gary Strand
strandwg@xxxxxxxx
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David W. Pierce
Division of Climate, Atmospheric Science, and Physical Oceanography
Scripps Institution of Oceanography
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Jennifer M. Adams
IGES/COLA
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