I am running 10.6.4, compiling static, to a local directory, using fink
compilers. make ran okay. "make check" failed as follows:
==================
> All 2 tests passed
> ==================
> Making check in ncdump
> make check-recursive
> Making check in cdl4
> make[3]: Nothing to be done for `check'.
> Making check in expected4
> make[3]: Nothing to be done for `check'.
> make rewrite-scalar ctest ctest64 ncdump tst_utf8 tst_create_files
> tst_h_rdc0 tst_group_data tst_enum_data tst_opaque_data tst_string_data
> tst_vlen_data tst_comp tst_comp2 tst_nans tst_special_atts tst_unicode
> tst_fillbug
> depbase=`echo rewrite-scalar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> /sw/bin/gcc-4 -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../include
> -I../nc_test -I../liblib -I/netcdf4Static/local/include
> -I/netcdf4Static/local/include -I/netcdf4Static/local/include -I/sw/include
> -g -O2 -MT rewrite-scalar.o -MD -MP -MF $depbase.Tpo -c -o rewrite-scalar.o
> rewrite-scalar.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/sh ../libtool --tag=CC --mode=link /sw/bin/gcc-4 -g -O2 -o
> rewrite-scalar rewrite-scalar.o -lm ../liblib/libnetcdf.la
> -L/netcdf4Static/local/lib -lhdf5_hl -lhdf5 -L/netcdf4Static/local/lib -lz
> -L/netcdf4Static/local/lib -lsz -L/sw/lib -lcurl
> libtool: link: /sw/bin/gcc-4 -g -O2 -o rewrite-scalar rewrite-scalar.o
> ../liblib/.libs/libnetcdf.a -L/netcdf4Static/local/lib -L/sw/lib
> /netcdf4Static/local/lib/libhdf5_hl.a /netcdf4Static/local/lib/libhdf5.a -lm
> -lz /netcdf4static/local/lib/libsz.dylib /sw/lib/libcurl.dylib
> depbase=`echo ctest.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> /sw/bin/gcc-4 -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../include
> -I../nc_test -I../liblib -I/netcdf4Static/local/include
> -I/netcdf4Static/local/include -I/netcdf4Static/local/include -I/sw/include
> -g -O2 -MT ctest.o -MD -MP -MF $depbase.Tpo -c -o ctest.o ctest.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/sh ../libtool --tag=CC --mode=link /sw/bin/gcc-4 -g -O2 -o ctest
> ctest.o -lm ../liblib/libnetcdf.la -L/netcdf4Static/local/lib -lhdf5_hl
> -lhdf5 -L/netcdf4Static/local/lib -lz -L/netcdf4Static/local/lib -lsz
> -L/sw/lib -lcurl
> libtool: link: /sw/bin/gcc-4 -g -O2 -o ctest ctest.o
> ../liblib/.libs/libnetcdf.a -L/netcdf4Static/local/lib -L/sw/lib
> /netcdf4Static/local/lib/libhdf5_hl.a /netcdf4Static/local/lib/libhdf5.a -lm
> -lz /netcdf4static/local/lib/libsz.dylib /sw/lib/libcurl.dylib
> Undefined symbols:
> "_main", referenced from:
> start in crt1.10.5.o
> ld: symbol(s) not found
> collect2: ld returned 1 exit status
> make[4]: *** [ctest] Error 1
> make[3]: *** [check-am] Error 2
> make[2]: *** [check-recursive] Error 1
> make[1]: *** [check] Error 2
> make: *** [check-recursive] Error 1
>
-Roy
On Jul 12, 2010, at 1:04 PM, Jeff Whitaker wrote:
> On 7/12/10 2:03 PM, Sean McBride wrote:
>> On Mon, 12 Jul 2010 13:11:02 -0600, Jeff Whitaker said:
>>
>>> It looks like the C lib refactoring may be a problem on OSX..
>>>
>>> ld: duplicate symbol _nc_inq_att in
>>> .libs/libnetcdf.lax/libncdap4.a/att.o and
>>> .libs/libnetcdf.lax/libdispatch.a/att.o
>>>
>>> (error when linking libnetcdf.dylib)
>> I wonder if that's because OS X comes with something named libdispatch
>> already:
>>
>> <http://en.wikipedia.org/wiki/Libdispatch>
>>
> I'm not running 10.6.
>
> -Jeff
>
> --
> Jeffrey S. Whitaker Phone : (303)497-6313
> Meteorologist FAX : (303)497-6449
> NOAA/OAR/PSD R/PSD1 Email : Jeffrey.S.Whitaker@xxxxxxxx
> 325 Broadway Office : Skaggs Research Cntr 1D-113
> Boulder, CO, USA 80303-3328 Web : http://tinyurl.com/5telg
>
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**********************
"The contents of this message do not reflect any position of the U.S.
Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
1352 Lighthouse Avenue
Pacific Grove, CA 93950-2097
e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
voice: (831)-648-9029
fax: (831)-648-8440
www: http://www.pfeg.noaa.gov/
"Old age and treachery will overcome youth and skill."
"From those who have been given much, much will be expected"
