Hi Russ:
A follow-up. As I reported, the fink compilers failed even with '-m32'
included.
However, I did get a successful build and test using the Apple supplied gcc and
g++ and the gfortran that Simon Urbanek distributes as part of the R-project,
that works with the Apple compilers.
-Roy
On Jul 12, 2010, at 2:15 PM, Russ Rew wrote:
> Roy,
>
> I got the same thing using gcc/gfortran from hpc.sourceforge.net/. But
> then it all worked fine when I set
>
> CFLAGS=-m32
> FCFLAGS=-m32
> CXXFLAGS=-m32
> export CFLAGS FCFLAGS CXXFLAGS
>
> before running configure. Maybe like mine, your libhdf5.a was compiled
> with "-m32".
>
> --Russ
>
>> I am running 10.6.4, compiling static, to a local directory, using fink compi
>> lers. make ran okay. "make check" failed as follows:
>>
>> ==================
>>> All 2 tests passed
>>> ==================
>>> Making check in ncdump
>>> make check-recursive
>>> Making check in cdl4
>>> make[3]: Nothing to be done for `check'.
>>> Making check in expected4
>>> make[3]: Nothing to be done for `check'.
>>> make rewrite-scalar ctest ctest64 ncdump tst_utf8 tst_create_files tst_h_r
>> dc0 tst_group_data tst_enum_data tst_opaque_data tst_string_data tst_vlen_dat
>> a tst_comp tst_comp2 tst_nans tst_special_atts tst_unicode tst_fillbug
>>> depbase=`echo rewrite-scalar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
>>> /sw/bin/gcc-4 -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../include -I../
>> nc_test -I../liblib -I/netcdf4Static/local/include -I/netcdf4Static/local/in
>> clude -I/netcdf4Static/local/include -I/sw/include -g -O2 -MT rewrite-scala
>> r.o -MD -MP -MF $depbase.Tpo -c -o rewrite-scalar.o rewrite-scalar.c &&\
>>> mv -f $depbase.Tpo $depbase.Po
>>> /bin/sh ../libtool --tag=CC --mode=link /sw/bin/gcc-4 -g -O2 -o rewrit
>> e-scalar rewrite-scalar.o -lm ../liblib/libnetcdf.la -L/netcdf4Static/local/
>> lib -lhdf5_hl -lhdf5 -L/netcdf4Static/local/lib -lz -L/netcdf4Static/local/li
>> b -lsz -L/sw/lib -lcurl
>>> libtool: link: /sw/bin/gcc-4 -g -O2 -o rewrite-scalar rewrite-scalar.o ../
>> liblib/.libs/libnetcdf.a -L/netcdf4Static/local/lib -L/sw/lib /netcdf4Static/
>> local/lib/libhdf5_hl.a /netcdf4Static/local/lib/libhdf5.a -lm -lz /netcdf4sta
>> tic/local/lib/libsz.dylib /sw/lib/libcurl.dylib
>>> depbase=`echo ctest.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
>>> /sw/bin/gcc-4 -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../include -I../
>> nc_test -I../liblib -I/netcdf4Static/local/include -I/netcdf4Static/local/in
>> clude -I/netcdf4Static/local/include -I/sw/include -g -O2 -MT ctest.o -MD -
>> MP -MF $depbase.Tpo -c -o ctest.o ctest.c &&\
>>> mv -f $depbase.Tpo $depbase.Po
>>> /bin/sh ../libtool --tag=CC --mode=link /sw/bin/gcc-4 -g -O2 -o ctest
>> ctest.o -lm ../liblib/libnetcdf.la -L/netcdf4Static/local/lib -lhdf5_hl -lhd
>> f5 -L/netcdf4Static/local/lib -lz -L/netcdf4Static/local/lib -lsz -L/sw/lib -
>> lcurl
>>> libtool: link: /sw/bin/gcc-4 -g -O2 -o ctest ctest.o ../liblib/.libs/libne
>> tcdf.a -L/netcdf4Static/local/lib -L/sw/lib /netcdf4Static/local/lib/libhdf5_
>> hl.a /netcdf4Static/local/lib/libhdf5.a -lm -lz /netcdf4static/local/lib/libs
>> z.dylib /sw/lib/libcurl.dylib
>>> Undefined symbols:
>>> "_main", referenced from:
>>> start in crt1.10.5.o
>>> ld: symbol(s) not found
>>> collect2: ld returned 1 exit status
>>> make[4]: *** [ctest] Error 1
>>> make[3]: *** [check-am] Error 2
>>> make[2]: *** [check-recursive] Error 1
>>> make[1]: *** [check] Error 2
>>> make: *** [check-recursive] Error 1
>>>
>>
>> -Roy
>>
>> On Jul 12, 2010, at 1:04 PM, Jeff Whitaker wrote:
>>
>>> On 7/12/10 2:03 PM, Sean McBride wrote:
>>>> On Mon, 12 Jul 2010 13:11:02 -0600, Jeff Whitaker said:
>>>>
>>>>> It looks like the C lib refactoring may be a problem on OSX..
>>>>>
>>>>> ld: duplicate symbol _nc_inq_att in
>>>>> .libs/libnetcdf.lax/libncdap4.a/att.o and
>>>>> .libs/libnetcdf.lax/libdispatch.a/att.o
>>>>>
>>>>> (error when linking libnetcdf.dylib)
>>>> I wonder if that's because OS X comes with something named libdispatch
>>>> already:
>>>>
>>>> <http://en.wikipedia.org/wiki/Libdispatch>
>>>>
>>> I'm not running 10.6.
>>>
>>> -Jeff
>>>
>>> --
>>> Jeffrey S. Whitaker Phone : (303)497-6313
>>> Meteorologist FAX : (303)497-6449
>>> NOAA/OAR/PSD R/PSD1 Email : Jeffrey.S.Whitaker@xxxxxxxx
>>> 325 Broadway Office : Skaggs Research Cntr 1D-113
>>> Boulder, CO, USA 80303-3328 Web : http://tinyurl.com/5telg
>>>
>>> _______________________________________________
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>>> netcdfgroup@xxxxxxxxxxxxxxxx
>>> For list information or to unsubscribe, visit: http://www.unidata.ucar.edu
>> /mailing_lists/
>>
>> **********************
>> "The contents of this message do not reflect any position of the U.S. Governm
>> ent or NOAA."
>> **********************
>> Roy Mendelssohn
>> Supervisory Operations Research Analyst
>> NOAA/NMFS
>> Environmental Research Division
>> Southwest Fisheries Science Center
>> 1352 Lighthouse Avenue
>> Pacific Grove, CA 93950-2097
>>
>> e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
>> voice: (831)-648-9029
>> fax: (831)-648-8440
>> www: http://www.pfeg.noaa.gov/
>>
>> "Old age and treachery will overcome youth and skill."
>> "From those who have been given much, much will be expected"
>>
>> _______________________________________________
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>> netcdfgroup@xxxxxxxxxxxxxxxx
>> For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/m
>> ailing_lists/
**********************
"The contents of this message do not reflect any position of the U.S.
Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
1352 Lighthouse Avenue
Pacific Grove, CA 93950-2097
e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
voice: (831)-648-9029
fax: (831)-648-8440
www: http://www.pfeg.noaa.gov/
"Old age and treachery will overcome youth and skill."
"From those who have been given much, much will be expected"
