Marston Sheldon Johnston <marston@xxxxxxxxxxx> writes:
> Hi,
>
> I'm trying to install netcdf 4.1.1 together with hdf5 1.8.2.
> I keep getting an error when compiling netcdf:
>
> Making all in ncdump
> make[2]: Entering directory `/home/marston/SOFTWARE/netcdf-4.1.1/ncdump'
> ../ncgen/ncgen -c -o ctest0.nc ./../ncgen/c0.cdl > ./ctest.c
> /home/marston/SOFTWARE/netcdf-4.1.1/ncgen/.libs/lt-ncgen: symbol lookup
> error: /home/marston/SOFTWARE/netcdf-4.1.1/libsrc4/.libs/libnetcdf.so.6:
> undefined symbol: ompi_mpi_char
> make[2]: *** [ctest.c] Error 127
> make[2]: Leaving directory `/home/marston/SOFTWARE/netcdf-4.1.1/ncdump'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/home/marston/SOFTWARE/netcdf-4.1.1'
> make: *** [all] Error 2
>
>
> I've updated openMPI but still I get this error.
>
> Does anyone know what's going on here?
>
> /M
>
> -
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> ~ Marston S. Johnston e-mail:
> marston@xxxxxxxxxxx ~
> ~ Doctoral Student Earth and Space
> Sciences ~
> ~ Chalmers University of Technology http://www.chalmers.se ~
> ~ Gothenburg Tel. (46) 31
> 772 2235 ~
> ~ Sweden Skype ID
> marston.johnston ~
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Howdy Marston!
You need to get the latest HDF5 - version 1.8.5-patch1.
If you are doing parallel I/O, you want to get the netCDF daily
snapshot, which contains many improvements to parallel I/O performance
that are not yet in a released version:
ftp://ftp.unidata.ucar.edu/pub/netcdf/snapshot/netcdf-4-daily.tar.gz.
You also want to be sure you are compiling with the MPI compiler (mpicc,
usually), and that you have built HDF5 with --enable-parallel and
--with-zlib=/somewhere.
If that does work, please let me know.
Thanks,
Ed
--
Ed Hartnett -- ed@xxxxxxxxxxxxxxxx
