Dear Luis,
the directory of your ncgen (/sw/netcdf/4.4.1/bin/ncgen) indicates that
the binary is the same independent of the loaded compiler module.
netCDF uses external libraries such as HDF5, zlib and szip. Depending on
the loaded compiler module, different HDF5, zlib and szip library pathes
(e.g. one per compiler module) might be in your systems library path.
Thus, depending on the loaded compiler module, netCDF might use
different versions of these libraries. However, it depends on how the
libraries were linked at compile time.
Do you know how these libraries were linked to your netCDF during the
compilation? Do you know with which compiler your netCDF library and
binaries were compiled? Did you compile netCDF on your own? And, if yes,
can you provide us the 'configure'-call you used (the arguments you used).
Cheers,
Daniel
On 25.08.2017 10:32, Luis Cebamanos wrote:
I've got some more details.
If the Intel compiler 16 is loaded I get Seg fault, however if I load
the Intel compiler 17 then I get " Bad octaol constant"
/sw/netcdf/4.4.1/bin/ncgen -o in.nc in.cdl
Bad octal constant: \b\n\0"
I think this is not a new error. Is there a workaround?
Luis
On 22/08/2017 18:45, dmh@xxxxxxxx wrote:
Odd. just running the bare ncgen/ncdump/nccopy
commands works as expected in the current release
candidate. Has anyone else seen this behavior?
=Dennis Heimbigner
Unidata
On 8/22/2017 7:10 AM, Luis Cebamanos wrote:
Trying to compile NCO I came across this issue with Make:
/sw/netcdf/4.4.1/bin/ncgen -o big.nc big.cdl
make[2]: *** [big.nc] Segmentation fault
I then realized that the following commands were given Seg faults:
$/sw/netcdf/4.4.1/bin/ncgen
Segmentation fault
$/sw/netcdf/4.4.1/bin/ncdump
Segmentation fault
$/sw/netcdf/4.4.1/bin/nccopy
Segmentation fault
Is this because netCDF 4.4.1 has not been properly installed ?
Thanks,
Luis
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Daniel Neumann
Leibniz Institute for Baltic Sea Research Warnemuende
Physical Oceanography and Instrumentation
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