The missing functions are from HDF4, and I don't see any HDF4 libraries on
your link line.
What was your configure command?
On Tue, Sep 28, 2021 at 8:00 AM Ronald Opio <opioronald123@xxxxxxxxx> wrote:
> Hello colleagues.
>
> I am trying to install netcdf (4.1.3) with netcdf-4 enabled and with hdf4
> (4.2.9) and hdf5 (1.8.12) but I get this error in the make stage:
>
> /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
> -L/home/opio/wrf/libraries/hdf/lib -o ncgen3 main.o load.o escapes.o
> getfill.o init.o genlib.o ncgentab.o ../liblib/libnetcdf.la -lhdf5_hl
> -lhdf5 -lm -lz
> libtool: link: gcc -g -O2 -o ncgen3 main.o load.o escapes.o getfill.o
> init.o genlib.o ncgentab.o -L/home/opio/wrf/libraries/hdf/lib
> ../liblib/.libs/libnetcdf.a -L/home/opio/wrf/libraries/grib2/lib
> /home/opio/wrf/libraries/hdf/lib/libhdf5_hl.so
> /home/opio/wrf/libraries/hdf/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath
> -Wl,/home/opio/wrf/libraries/hdf/lib -Wl,-rpath
> -Wl,/home/opio/wrf/libraries/hdf/lib
> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): in
> function `nc4_open_hdf4_file':
> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2173: undefined
> reference to `SDstart'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2177:
> undefined reference to `SDfileinfo'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2197:
> undefined reference to `SDattrinfo'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2211:
> undefined reference to `SDreadattr'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2231:
> undefined reference to `SDselect'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2237:
> undefined reference to `SDgetinfo'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2256:
> undefined reference to `SDgetfillvalue'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2333:
> undefined reference to `SDattrinfo'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2347:
> undefined reference to `SDreadattr'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2279:
> undefined reference to `SDgetdimid'
> /usr/bin/ld: /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2281:
> undefined reference to `SDdiminfo'
> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): in
> function `close_netcdf4_file':
> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2702: undefined
> reference to `SDend'
> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4var.o): in
> function `nc4_get_hdf4_vara':
> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4var.c:1358: undefined
> reference to `SDreaddata'
> collect2: error: ld returned 1 exit status
> make[2]: *** [Makefile:370: ncgen3] Error 1
> make[2]: Leaving directory '/home/opio/wrf/libraries/netcdf-4.1.3/ncgen3'
> make[1]: *** [Makefile:551: all-recursive] Error 1
> make[1]: Leaving directory '/home/opio/wrf/libraries/netcdf-4.1.3'
> make: *** [Makefile:422: all] Error 2
>
>
> I have read all existing solutions but none has worked for my case yet. I
> kindly request help to solve it.
>
>
> Ronald.
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