Here it is:
./configure --prefix=$DIR/netcdf --disable-dap --enable-netcdf4
--disable-shared --enable-hdf4 --with-hdf4=$DIR/hdf4 --with-hdf5=$DIR/hdf5
LDFLAGS="-L$DIR/hdf5/lib -L$DIR/hdf4/lib" CPPFLAGS="-I$DIR/hdf5/include
-I$DIR/hdf4/include"
On Tue, Sep 28, 2021 at 6:33 PM Ed Hartnett <edwardjameshartnett@xxxxxxxxx>
wrote:
> The missing functions are from HDF4, and I don't see any HDF4 libraries on
> your link line.
>
> What was your configure command?
>
>
> On Tue, Sep 28, 2021 at 8:00 AM Ronald Opio <opioronald123@xxxxxxxxx>
> wrote:
>
>> Hello colleagues.
>>
>> I am trying to install netcdf (4.1.3) with netcdf-4 enabled and with hdf4
>> (4.2.9) and hdf5 (1.8.12) but I get this error in the make stage:
>>
>> /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
>> -L/home/opio/wrf/libraries/hdf/lib -o ncgen3 main.o load.o escapes.o
>> getfill.o init.o genlib.o ncgentab.o ../liblib/libnetcdf.la -lhdf5_hl
>> -lhdf5 -lm -lz
>> libtool: link: gcc -g -O2 -o ncgen3 main.o load.o escapes.o getfill.o
>> init.o genlib.o ncgentab.o -L/home/opio/wrf/libraries/hdf/lib
>> ../liblib/.libs/libnetcdf.a -L/home/opio/wrf/libraries/grib2/lib
>> /home/opio/wrf/libraries/hdf/lib/libhdf5_hl.so
>> /home/opio/wrf/libraries/hdf/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath
>> -Wl,/home/opio/wrf/libraries/hdf/lib -Wl,-rpath
>> -Wl,/home/opio/wrf/libraries/hdf/lib
>> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): in
>> function `nc4_open_hdf4_file':
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2173: undefined
>> reference to `SDstart'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2177: undefined
>> reference to `SDfileinfo'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2197: undefined
>> reference to `SDattrinfo'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2211: undefined
>> reference to `SDreadattr'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2231: undefined
>> reference to `SDselect'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2237: undefined
>> reference to `SDgetinfo'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2256: undefined
>> reference to `SDgetfillvalue'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2333: undefined
>> reference to `SDattrinfo'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2347: undefined
>> reference to `SDreadattr'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2279: undefined
>> reference to `SDgetdimid'
>> /usr/bin/ld:
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2281: undefined
>> reference to `SDdiminfo'
>> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): in
>> function `close_netcdf4_file':
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2702: undefined
>> reference to `SDend'
>> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4var.o): in
>> function `nc4_get_hdf4_vara':
>> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4var.c:1358: undefined
>> reference to `SDreaddata'
>> collect2: error: ld returned 1 exit status
>> make[2]: *** [Makefile:370: ncgen3] Error 1
>> make[2]: Leaving directory '/home/opio/wrf/libraries/netcdf-4.1.3/ncgen3'
>> make[1]: *** [Makefile:551: all-recursive] Error 1
>> make[1]: Leaving directory '/home/opio/wrf/libraries/netcdf-4.1.3'
>> make: *** [Makefile:422: all] Error 2
>>
>>
>> I have read all existing solutions but none has worked for my case yet. I
>> kindly request help to solve it.
>>
>>
>> Ronald.
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>
