Hi Jim.
Thanks. I agree it's not finding it but I can't figure out why it isn't.
Cheers.
--------------
John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760
840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
/www.sdsc.edu/~hellyj
On Aug 2, 2010, at 6:27 AM, Jim Edwards wrote:
Hi John,
Looks like you are finding the hdf5 include files but not the library file.
From your logs look in /usr/local/hdf5-1.8.5-macosx64-static/lib
for the file libhdf5.a or libhdf5.so one of these should be present, if not
there is your problem. If so try linking to it with a small test program.
On Sun, Aug 1, 2010 at 8:09 PM, John Helly <hellyj@xxxxxxxx> wrote:
Cheers.
--------------
John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760
840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
/www.sdsc.edu/~hellyj
On Aug 1, 2010, at 7:04 PM, John Helly wrote:
Same result with the beta as well.
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking whether we should try to build netCDF-4... yes
checking for H5Fflush in -lhdf5... no
configure: error: Can't find or link to the hdf5 library. Configure with
--disable-netcdf-4 or see config.log for errors.
NeptuneStonesteps.local:~/src/netcdf-4.1.2-beta1>
Cheers.
--------------
John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760
840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
/www.sdsc.edu/~hellyj
On Aug 1, 2010, at 7:01 PM, John Helly wrote:
Greetings.
I am struggling to compile netcdf-4.1.1 on OSX 10.6.4 with hdf5 and fortran so
I can build Dave Pierce's new ncview. I have worked my way through some
earlier problems and have come to this script:
#!/bin/bash
make distclean
#export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx32-static"
export CC=/usr/bin/cc
export CFLAGS='-m32'
#export CPPFLAGS=-Df2cFortran
export F77=gfortran
export FC=gfortran
export FCFLAGS=-qsuffix=cpp=f90
./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90
--with-hdf5=/usr/local/hdf5-1.8.5-macosx32-static
#
#export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx64-static"
#./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90
--with-hdf5=/usr/local/hdf5-1.8.5-macosx64-static
This got me past some earlier problems with 32-bit fortran libraries (I think)
but now I'm getting complaints about the hdf5 libraries even though they seem
to be found for some things.
checking for manual-page index command...
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking whether we should try to build netCDF-4... yes
checking for H5Fflush in -lhdf5... no
configure: error: Can't find or link to the hdf5 library. Configure with
--disable-netcdf-4 or see config.log for errors.
I'm attaching the config.log for those who might care to look. In the script
above, you can see that I experimented with defining the LDFLAGS and this
solved the problem of the missing -lhdf5 but introduced a bunch of other even
stranger problems that made me think I was overriding some more basic library
paths by specifying LDFLAGS. Anyway, I couldn't figure out what those problems
were so I backed up to this in hoping that someone out there would have a
suggestion.
Any help would be appreciated.
Cheers.
--------------
John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760
840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
/www.sdsc.edu/~hellyj
<config.log>
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