Hi John,
Looks like you are finding the hdf5 include files but not the library
file.
>From your logs look in /usr/local/hdf5-1.8.5-macosx64-static/lib
for the file libhdf5.a or libhdf5.so one of these should be present, if
not there is your problem. If so try linking to it with a small test
program.
On Sun, Aug 1, 2010 at 8:09 PM, John Helly <hellyj@xxxxxxxx> wrote:
>
> Cheers.
> --------------
> John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
> Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01
> 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / /
> www.sdsc.edu/~hellyj <http://www.sdsc.edu/%7Ehellyj>
>
>
>
>
> On Aug 1, 2010, at 7:04 PM, John Helly wrote:
>
> Same result with the beta as well.
>
> checking hdf5.h presence... yes
> checking for hdf5.h... yes
> checking whether we should try to build netCDF-4... yes
> checking for H5Fflush in -lhdf5... no
> configure: error: Can't find or link to the hdf5 library. Configure with
> --disable-netcdf-4 or see config.log for errors.
> NeptuneStonesteps.local:~/src/netcdf-4.1.2-beta1>
>
>
> Cheers.
> --------------
> John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
> Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01
> 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / /
> www.sdsc.edu/~hellyj <http://www.sdsc.edu/%7Ehellyj>
>
>
>
>
> On Aug 1, 2010, at 7:01 PM, John Helly wrote:
>
> Greetings.
>
> I am struggling to compile netcdf-4.1.1 on OSX 10.6.4 with hdf5 and fortran
> so I can build Dave Pierce's new ncview. I have worked my way through some
> earlier problems and have come to this script:
>
> #!/bin/bash
> make distclean
> #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx32-static"
> export CC=/usr/bin/cc
> export CFLAGS='-m32'
> #export CPPFLAGS=-Df2cFortran
> export F77=gfortran
> export FC=gfortran
> export FCFLAGS=-qsuffix=cpp=f90
> ./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90
> --with-hdf5=/usr/local/hdf5-1.8.5-macosx32-static
> #
> #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx64-static"
> #./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4
> --enable-f90 --with-hdf5=/usr/local/hdf5-1.8.5-macosx64-static
>
>
> This got me past some earlier problems with 32-bit fortran libraries (I
> think) but now I'm getting complaints about the hdf5 libraries even though
> they seem to be found for some things.
>
> checking for manual-page index command...
> checking hdf5.h usability... yes
> checking hdf5.h presence... yes
> checking for hdf5.h... yes
> checking whether we should try to build netCDF-4... yes
> checking for H5Fflush in -lhdf5... no
> configure: error: Can't find or link to the hdf5 library. Configure with
> --disable-netcdf-4 or see config.log for errors.
>
>
> I'm attaching the config.log for those who might care to look. In the
> script above, you can see that I experimented with defining the LDFLAGS and
> this solved the problem of the missing -lhdf5 but introduced a bunch of
> other even stranger problems that made me think I was overriding some more
> basic library paths by specifying LDFLAGS. Anyway, I couldn't figure out
> what those problems were so I backed up to this in hoping that someone out
> there would have a suggestion.
>
> Any help would be appreciated.
>
> Cheers.
> --------------
> John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
> Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01
> 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / /
> www.sdsc.edu/~hellyj <http://www.sdsc.edu/%7Ehellyj>
> <config.log>
>
>
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